Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20850 and PS417_20855 are separated by 20 nucleotides PS417_20855 and PS417_20860 are separated by 453 nucleotides
PS417_20850: PS417_20850 - hypothetical protein, at 4,527,009 to 4,528,970
_20850
PS417_20855: PS417_20855 - hypothetical protein, at 4,528,991 to 4,529,422
_20855
PS417_20860: PS417_20860 - DNA polymerase III subunit gamma/tau, at 4,529,876 to 4,531,039
_20860
Position (kb)
4528
4529
4530 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4527.991 kb on + strand, within PS417_20850 at 4527.991 kb on + strand, within PS417_20850 at 4527.991 kb on + strand, within PS417_20850 at 4527.992 kb on - strand, within PS417_20850 at 4527.992 kb on - strand, within PS417_20850 at 4528.105 kb on + strand, within PS417_20850 at 4528.105 kb on + strand, within PS417_20850 at 4528.105 kb on + strand, within PS417_20850 at 4528.106 kb on - strand, within PS417_20850 at 4528.106 kb on - strand, within PS417_20850 at 4528.106 kb on - strand, within PS417_20850 at 4528.106 kb on - strand, within PS417_20850 at 4528.173 kb on - strand, within PS417_20850 at 4528.173 kb on - strand, within PS417_20850 at 4528.249 kb on - strand, within PS417_20850 at 4528.571 kb on - strand, within PS417_20850 at 4528.571 kb on - strand, within PS417_20850 at 4528.603 kb on + strand, within PS417_20850 at 4528.655 kb on + strand, within PS417_20850 at 4528.656 kb on - strand, within PS417_20850 at 4528.952 kb on + strand at 4528.971 kb on - strand at 4529.047 kb on + strand, within PS417_20855 at 4529.048 kb on - strand, within PS417_20855 at 4529.711 kb on - strand at 4529.773 kb on + strand at 4529.774 kb on - strand at 4529.774 kb on - strand at 4529.784 kb on - strand at 4529.932 kb on + strand at 4529.976 kb on + strand at 4530.087 kb on + strand, within PS417_20860 at 4530.283 kb on - strand, within PS417_20860 at 4530.306 kb on + strand, within PS417_20860 at 4530.306 kb on + strand, within PS417_20860 at 4530.382 kb on - strand, within PS417_20860 at 4530.385 kb on - strand, within PS417_20860
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 4,527,991 + PS417_20850 0.50 +0.4 4,527,991 + PS417_20850 0.50 -0.3 4,527,991 + PS417_20850 0.50 +1.2 4,527,992 - PS417_20850 0.50 -1.0 4,527,992 - PS417_20850 0.50 -0.8 4,528,105 + PS417_20850 0.56 -0.2 4,528,105 + PS417_20850 0.56 -1.0 4,528,105 + PS417_20850 0.56 +0.0 4,528,106 - PS417_20850 0.56 -0.1 4,528,106 - PS417_20850 0.56 -2.0 4,528,106 - PS417_20850 0.56 +0.6 4,528,106 - PS417_20850 0.56 -0.3 4,528,173 - PS417_20850 0.59 -0.3 4,528,173 - PS417_20850 0.59 +0.5 4,528,249 - PS417_20850 0.63 -0.2 4,528,571 - PS417_20850 0.80 +0.3 4,528,571 - PS417_20850 0.80 -0.3 4,528,603 + PS417_20850 0.81 -0.2 4,528,655 + PS417_20850 0.84 -0.2 4,528,656 - PS417_20850 0.84 +1.1 4,528,952 + -0.5 4,528,971 - +0.6 4,529,047 + PS417_20855 0.13 -3.0 4,529,048 - PS417_20855 0.13 -2.0 4,529,711 - -0.8 4,529,773 + -1.5 4,529,774 - -0.1 4,529,774 - -0.5 4,529,784 - -0.4 4,529,932 + -1.0 4,529,976 + -0.3 4,530,087 + PS417_20860 0.18 -0.9 4,530,283 - PS417_20860 0.35 -0.4 4,530,306 + PS417_20860 0.37 +0.5 4,530,306 + PS417_20860 0.37 -1.3 4,530,382 - PS417_20860 0.43 +0.1 4,530,385 - PS417_20860 0.44 -0.7
Or see this region's nucleotide sequence