Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01760 and PS417_01765 are separated by 12 nucleotides PS417_01765 and PS417_01770 are separated by 129 nucleotides PS417_01770 and PS417_01775 are separated by 153 nucleotides
PS417_01760: PS417_01760 - imidazolonepropionase, at 391,604 to 392,809
_01760
PS417_01765: PS417_01765 - N-formylglutamate amidohydrolase, at 392,822 to 393,622
_01765
PS417_01770: PS417_01770 - glycine/betaine ABC transporter substrate-binding protein, at 393,752 to 394,687
_01770
PS417_01775: PS417_01775 - lipase, at 394,841 to 395,770
_01775
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 392.817 kb on + strand at 392.817 kb on + strand at 392.817 kb on + strand at 392.818 kb on - strand at 392.818 kb on - strand at 392.818 kb on - strand at 392.818 kb on - strand at 393.687 kb on - strand at 393.721 kb on + strand at 393.722 kb on - strand at 393.726 kb on + strand at 393.726 kb on + strand at 393.982 kb on + strand, within PS417_01770 at 394.109 kb on + strand, within PS417_01770 at 394.181 kb on + strand, within PS417_01770 at 394.181 kb on + strand, within PS417_01770 at 394.407 kb on + strand, within PS417_01770 at 394.407 kb on + strand, within PS417_01770 at 394.408 kb on - strand, within PS417_01770 at 394.666 kb on - strand at 394.754 kb on + strand at 394.755 kb on - strand at 394.844 kb on + strand at 394.935 kb on - strand, within PS417_01775 at 394.935 kb on - strand, within PS417_01775 at 395.025 kb on - strand, within PS417_01775 at 395.072 kb on + strand, within PS417_01775 at 395.072 kb on + strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.075 kb on - strand, within PS417_01775 at 395.076 kb on + strand, within PS417_01775 at 395.076 kb on + strand, within PS417_01775 at 395.077 kb on - strand, within PS417_01775 at 395.376 kb on + strand, within PS417_01775 at 395.376 kb on + strand, within PS417_01775 at 395.377 kb on - strand, within PS417_01775 at 395.471 kb on + strand, within PS417_01775 at 395.472 kb on - strand, within PS417_01775 at 395.472 kb on - strand, within PS417_01775 at 395.483 kb on + strand at 395.609 kb on + strand, within PS417_01775
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 392,817 + -0.9 392,817 + -0.5 392,817 + -1.6 392,818 - +0.2 392,818 - +1.5 392,818 - +2.8 392,818 - -0.1 393,687 - +2.2 393,721 + +0.4 393,722 - -0.0 393,726 + +0.2 393,726 + -0.2 393,982 + PS417_01770 0.25 -2.2 394,109 + PS417_01770 0.38 -0.9 394,181 + PS417_01770 0.46 -0.9 394,181 + PS417_01770 0.46 -0.4 394,407 + PS417_01770 0.70 +1.6 394,407 + PS417_01770 0.70 +0.7 394,408 - PS417_01770 0.70 -0.0 394,666 - +0.5 394,754 + -0.5 394,755 - +0.2 394,844 + -0.2 394,935 - PS417_01775 0.10 -0.1 394,935 - PS417_01775 0.10 +0.4 395,025 - PS417_01775 0.20 -0.6 395,072 + PS417_01775 0.25 +0.3 395,072 + PS417_01775 0.25 -0.3 395,073 - PS417_01775 0.25 +1.0 395,073 - PS417_01775 0.25 -1.4 395,073 - PS417_01775 0.25 +0.5 395,073 - PS417_01775 0.25 +1.5 395,073 - PS417_01775 0.25 -0.2 395,073 - PS417_01775 0.25 +0.1 395,075 - PS417_01775 0.25 +0.6 395,076 + PS417_01775 0.25 +0.7 395,076 + PS417_01775 0.25 -0.5 395,077 - PS417_01775 0.25 +0.1 395,376 + PS417_01775 0.58 -0.3 395,376 + PS417_01775 0.58 -0.1 395,377 - PS417_01775 0.58 -0.5 395,471 + PS417_01775 0.68 +1.1 395,472 - PS417_01775 0.68 -0.1 395,472 - PS417_01775 0.68 +1.2 395,483 + +0.2 395,609 + PS417_01775 0.83 +0.1
Or see this region's nucleotide sequence