Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13650 and PS417_13655 are separated by 7 nucleotides PS417_13655 and PS417_13660 are separated by 10 nucleotides PS417_13660 and PS417_13665 are separated by 109 nucleotides
PS417_13650: PS417_13650 - LacI family transcriptional regulator, at 3,003,790 to 3,004,791
_13650
PS417_13655: PS417_13655 - xylulose kinase, at 3,004,799 to 3,006,289
_13655
PS417_13660: PS417_13660 - AsnC family transcriptional regulator, at 3,006,300 to 3,006,743
_13660
PS417_13665: PS417_13665 - multidrug DMT transporter permease, at 3,006,853 to 3,007,755
_13665
Position (kb)
3004
3005
3006
3007 Strain fitness (log2 ratio)
-1
0
1
2 at 3003.923 kb on - strand, within PS417_13650 at 3003.923 kb on - strand, within PS417_13650 at 3003.969 kb on + strand, within PS417_13650 at 3004.007 kb on - strand, within PS417_13650 at 3004.761 kb on + strand at 3004.762 kb on - strand at 3004.918 kb on + strand at 3005.081 kb on + strand, within PS417_13655 at 3005.651 kb on + strand, within PS417_13655 at 3005.887 kb on + strand, within PS417_13655 at 3006.053 kb on + strand, within PS417_13655 at 3006.053 kb on + strand, within PS417_13655 at 3006.053 kb on + strand, within PS417_13655 at 3006.054 kb on - strand, within PS417_13655 at 3006.167 kb on + strand at 3006.374 kb on - strand, within PS417_13660 at 3006.593 kb on - strand, within PS417_13660 at 3006.593 kb on - strand, within PS417_13660 at 3006.754 kb on + strand at 3006.758 kb on - strand at 3006.824 kb on - strand at 3006.824 kb on - strand at 3007.154 kb on - strand, within PS417_13665 at 3007.170 kb on + strand, within PS417_13665 at 3007.171 kb on - strand, within PS417_13665 at 3007.171 kb on - strand, within PS417_13665
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 3,003,923 - PS417_13650 0.13 +1.4 3,003,923 - PS417_13650 0.13 -0.2 3,003,969 + PS417_13650 0.18 +0.0 3,004,007 - PS417_13650 0.22 -0.5 3,004,761 + +0.1 3,004,762 - -0.3 3,004,918 + +2.2 3,005,081 + PS417_13655 0.19 -1.5 3,005,651 + PS417_13655 0.57 -1.6 3,005,887 + PS417_13655 0.73 -0.3 3,006,053 + PS417_13655 0.84 -1.4 3,006,053 + PS417_13655 0.84 -0.7 3,006,053 + PS417_13655 0.84 +0.1 3,006,054 - PS417_13655 0.84 -0.4 3,006,167 + +0.2 3,006,374 - PS417_13660 0.17 +0.4 3,006,593 - PS417_13660 0.66 +0.9 3,006,593 - PS417_13660 0.66 -0.3 3,006,754 + -0.1 3,006,758 - -0.3 3,006,824 - +0.1 3,006,824 - -0.1 3,007,154 - PS417_13665 0.33 -0.6 3,007,170 + PS417_13665 0.35 +0.1 3,007,171 - PS417_13665 0.35 +0.1 3,007,171 - PS417_13665 0.35 +0.2
Or see this region's nucleotide sequence