Strain Fitness in Pseudomonas simiae WCS417 around PS417_13410

Experiment: R2A with Fusaric 120 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13405 and PS417_13410 are separated by 37 nucleotidesPS417_13410 and PS417_13415 are separated by 257 nucleotides PS417_13405: PS417_13405 - helicase UvrD, at 2,948,264 to 2,950,711 _13405 PS417_13410: PS417_13410 - hypothetical protein, at 2,950,749 to 2,951,021 _13410 PS417_13415: PS417_13415 - AraC family transcriptional regulator, at 2,951,279 to 2,952,088 _13415 Position (kb) 2950 2951 2952Strain fitness (log2 ratio) -1 0 1at 2949.770 kb on + strand, within PS417_13405at 2949.770 kb on + strand, within PS417_13405at 2949.770 kb on + strand, within PS417_13405at 2949.771 kb on - strand, within PS417_13405at 2949.771 kb on - strand, within PS417_13405at 2949.771 kb on - strand, within PS417_13405at 2950.013 kb on + strand, within PS417_13405at 2950.013 kb on + strand, within PS417_13405at 2950.013 kb on + strand, within PS417_13405at 2950.014 kb on - strand, within PS417_13405at 2950.079 kb on - strand, within PS417_13405at 2950.106 kb on + strand, within PS417_13405at 2950.406 kb on + strandat 2950.407 kb on - strand, within PS417_13405at 2950.444 kb on + strand, within PS417_13405at 2950.494 kb on + strandat 2950.495 kb on - strandat 2950.578 kb on - strandat 2950.610 kb on + strandat 2950.611 kb on - strandat 2950.611 kb on - strandat 2950.616 kb on + strandat 2950.617 kb on - strandat 2950.617 kb on - strandat 2950.726 kb on + strandat 2950.836 kb on + strand, within PS417_13410at 2951.022 kb on - strandat 2951.035 kb on + strandat 2951.036 kb on - strandat 2951.382 kb on + strand, within PS417_13415at 2951.390 kb on + strand, within PS417_13415at 2951.391 kb on - strand, within PS417_13415at 2951.391 kb on - strand, within PS417_13415at 2951.391 kb on - strand, within PS417_13415at 2951.393 kb on + strand, within PS417_13415at 2951.393 kb on + strand, within PS417_13415at 2951.393 kb on + strand, within PS417_13415at 2951.393 kb on + strand, within PS417_13415at 2951.394 kb on - strand, within PS417_13415at 2951.394 kb on - strand, within PS417_13415at 2951.394 kb on - strand, within PS417_13415at 2951.757 kb on - strand, within PS417_13415at 2951.778 kb on - strand, within PS417_13415at 2951.826 kb on - strand, within PS417_13415at 2951.826 kb on - strand, within PS417_13415at 2951.886 kb on - strand, within PS417_13415at 2952.000 kb on - strand, within PS417_13415

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
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2,949,770 + PS417_13405 0.62 +0.7
2,949,770 + PS417_13405 0.62 +0.3
2,949,770 + PS417_13405 0.62 +0.2
2,949,771 - PS417_13405 0.62 -0.2
2,949,771 - PS417_13405 0.62 -0.1
2,949,771 - PS417_13405 0.62 -1.7
2,950,013 + PS417_13405 0.71 +0.1
2,950,013 + PS417_13405 0.71 -0.0
2,950,013 + PS417_13405 0.71 +0.9
2,950,014 - PS417_13405 0.71 +1.7
2,950,079 - PS417_13405 0.74 +0.0
2,950,106 + PS417_13405 0.75 +0.1
2,950,406 + +0.7
2,950,407 - PS417_13405 0.88 -0.1
2,950,444 + PS417_13405 0.89 -0.0
2,950,494 + -0.3
2,950,495 - -0.4
2,950,578 - +0.7
2,950,610 + -0.2
2,950,611 - -0.1
2,950,611 - +0.2
2,950,616 + -1.4
2,950,617 - +0.1
2,950,617 - -0.1
2,950,726 + -0.3
2,950,836 + PS417_13410 0.32 -1.2
2,951,022 - -0.1
2,951,035 + -0.2
2,951,036 - -0.4
2,951,382 + PS417_13415 0.13 -0.3
2,951,390 + PS417_13415 0.14 -0.6
2,951,391 - PS417_13415 0.14 -0.5
2,951,391 - PS417_13415 0.14 +0.2
2,951,391 - PS417_13415 0.14 +0.1
2,951,393 + PS417_13415 0.14 +0.3
2,951,393 + PS417_13415 0.14 -0.1
2,951,393 + PS417_13415 0.14 -0.0
2,951,393 + PS417_13415 0.14 +1.3
2,951,394 - PS417_13415 0.14 -0.7
2,951,394 - PS417_13415 0.14 +0.2
2,951,394 - PS417_13415 0.14 -1.3
2,951,757 - PS417_13415 0.59 +0.4
2,951,778 - PS417_13415 0.62 +0.1
2,951,826 - PS417_13415 0.68 -0.1
2,951,826 - PS417_13415 0.68 -0.4
2,951,886 - PS417_13415 0.75 +1.7
2,952,000 - PS417_13415 0.89 -0.7

Or see this region's nucleotide sequence