Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11450 and PS417_11455 are separated by 103 nucleotides PS417_11455 and PS417_11460 are separated by 41 nucleotides
PS417_11450: PS417_11450 - AraC family transcriptional regulator, at 2,464,556 to 2,465,353
_11450
PS417_11455: PS417_11455 - hypothetical protein, at 2,465,457 to 2,467,010
_11455
PS417_11460: PS417_11460 - divalent metal cation transporter MntH, at 2,467,052 to 2,468,374
_11460
Position (kb)
2465
2466
2467
2468 Strain fitness (log2 ratio)
-2
-1
0
1 at 2464.536 kb on + strand at 2464.654 kb on + strand, within PS417_11450 at 2464.655 kb on - strand, within PS417_11450 at 2464.679 kb on + strand, within PS417_11450 at 2464.814 kb on + strand, within PS417_11450 at 2464.815 kb on - strand, within PS417_11450 at 2464.896 kb on + strand, within PS417_11450 at 2464.897 kb on - strand, within PS417_11450 at 2465.318 kb on + strand at 2465.422 kb on + strand at 2465.423 kb on - strand at 2465.544 kb on + strand at 2465.544 kb on + strand at 2465.760 kb on + strand, within PS417_11455 at 2465.761 kb on - strand, within PS417_11455 at 2466.013 kb on + strand, within PS417_11455 at 2466.014 kb on - strand, within PS417_11455 at 2466.109 kb on - strand, within PS417_11455 at 2466.214 kb on - strand, within PS417_11455 at 2466.543 kb on - strand, within PS417_11455 at 2467.011 kb on + strand at 2467.350 kb on + strand, within PS417_11460 at 2467.351 kb on - strand, within PS417_11460 at 2467.351 kb on - strand, within PS417_11460 at 2467.351 kb on - strand, within PS417_11460 at 2467.745 kb on + strand, within PS417_11460 at 2467.746 kb on - strand, within PS417_11460
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 2,464,536 + +0.4 2,464,654 + PS417_11450 0.12 -0.0 2,464,655 - PS417_11450 0.12 +0.2 2,464,679 + PS417_11450 0.15 -0.1 2,464,814 + PS417_11450 0.32 -0.2 2,464,815 - PS417_11450 0.32 -1.5 2,464,896 + PS417_11450 0.43 +0.8 2,464,897 - PS417_11450 0.43 +0.3 2,465,318 + +0.3 2,465,422 + +0.7 2,465,423 - +0.9 2,465,544 + -0.5 2,465,544 + -0.8 2,465,760 + PS417_11455 0.19 -2.4 2,465,761 - PS417_11455 0.20 -1.0 2,466,013 + PS417_11455 0.36 -1.6 2,466,014 - PS417_11455 0.36 +0.1 2,466,109 - PS417_11455 0.42 -1.6 2,466,214 - PS417_11455 0.49 -1.1 2,466,543 - PS417_11455 0.70 +0.0 2,467,011 + -0.5 2,467,350 + PS417_11460 0.23 -1.2 2,467,351 - PS417_11460 0.23 +0.7 2,467,351 - PS417_11460 0.23 -0.2 2,467,351 - PS417_11460 0.23 +0.1 2,467,745 + PS417_11460 0.52 -1.0 2,467,746 - PS417_11460 0.52 +0.1
Or see this region's nucleotide sequence