Strain Fitness in Pseudomonas simiae WCS417 around PS417_00440

Experiment: R2A with Fusaric 120 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00435 and PS417_00440 are separated by 88 nucleotidesPS417_00440 and PS417_00445 overlap by 4 nucleotides PS417_00435: PS417_00435 - DeoR faimly transcriptional regulator, at 84,512 to 86,566 _00435 PS417_00440: PS417_00440 - N-acetylmuramoyl-L-alanine amidase, at 86,655 to 87,431 _00440 PS417_00445: PS417_00445 - histidine kinase, at 87,428 to 89,215 _00445 Position (kb) 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 85.730 kb on + strand, within PS417_00435at 85.755 kb on + strand, within PS417_00435at 85.756 kb on - strand, within PS417_00435at 86.228 kb on + strand, within PS417_00435at 86.275 kb on - strand, within PS417_00435at 86.306 kb on - strand, within PS417_00435at 86.334 kb on + strand, within PS417_00435at 86.334 kb on + strand, within PS417_00435at 86.334 kb on + strand, within PS417_00435at 86.334 kb on + strand, within PS417_00435at 86.335 kb on - strand, within PS417_00435at 86.335 kb on - strand, within PS417_00435at 86.335 kb on - strand, within PS417_00435at 86.522 kb on + strandat 86.522 kb on + strandat 86.523 kb on - strandat 86.523 kb on - strandat 86.564 kb on + strandat 86.641 kb on + strandat 86.642 kb on - strandat 86.642 kb on - strandat 86.642 kb on - strandat 86.667 kb on + strandat 86.667 kb on + strandat 86.874 kb on + strand, within PS417_00440at 86.874 kb on + strand, within PS417_00440at 86.874 kb on + strand, within PS417_00440at 86.874 kb on + strand, within PS417_00440at 86.875 kb on - strand, within PS417_00440at 86.875 kb on - strand, within PS417_00440at 87.016 kb on - strand, within PS417_00440at 87.039 kb on - strand, within PS417_00440at 87.039 kb on - strand, within PS417_00440at 87.190 kb on + strand, within PS417_00440at 87.231 kb on + strand, within PS417_00440at 87.231 kb on + strand, within PS417_00440at 87.232 kb on - strand, within PS417_00440at 87.232 kb on - strand, within PS417_00440at 87.447 kb on + strandat 87.447 kb on + strandat 87.447 kb on + strandat 87.448 kb on - strandat 87.448 kb on - strandat 87.448 kb on - strandat 87.448 kb on - strandat 87.478 kb on - strandat 87.600 kb on + strandat 87.753 kb on + strand, within PS417_00445at 87.754 kb on - strand, within PS417_00445at 87.783 kb on - strand, within PS417_00445at 87.783 kb on - strand, within PS417_00445at 87.783 kb on - strand, within PS417_00445at 87.783 kb on - strand, within PS417_00445at 88.073 kb on + strand, within PS417_00445at 88.076 kb on + strand, within PS417_00445at 88.150 kb on + strand, within PS417_00445at 88.151 kb on - strand, within PS417_00445at 88.186 kb on - strand, within PS417_00445at 88.186 kb on - strand, within PS417_00445at 88.296 kb on - strand, within PS417_00445at 88.428 kb on - strand, within PS417_00445at 88.428 kb on - strand, within PS417_00445

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
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85,730 + PS417_00435 0.59 +0.5
85,755 + PS417_00435 0.60 -0.5
85,756 - PS417_00435 0.61 +0.9
86,228 + PS417_00435 0.84 -0.6
86,275 - PS417_00435 0.86 +0.5
86,306 - PS417_00435 0.87 +0.5
86,334 + PS417_00435 0.89 +0.4
86,334 + PS417_00435 0.89 -0.6
86,334 + PS417_00435 0.89 +0.4
86,334 + PS417_00435 0.89 +0.1
86,335 - PS417_00435 0.89 +0.1
86,335 - PS417_00435 0.89 -1.8
86,335 - PS417_00435 0.89 +0.1
86,522 + -0.6
86,522 + +0.1
86,523 - -0.2
86,523 - -0.3
86,564 + +0.1
86,641 + -0.3
86,642 - -0.5
86,642 - -0.3
86,642 - -0.5
86,667 + -0.3
86,667 + +0.3
86,874 + PS417_00440 0.28 +0.5
86,874 + PS417_00440 0.28 +0.4
86,874 + PS417_00440 0.28 -1.5
86,874 + PS417_00440 0.28 -0.9
86,875 - PS417_00440 0.28 -0.9
86,875 - PS417_00440 0.28 -1.1
87,016 - PS417_00440 0.46 -0.8
87,039 - PS417_00440 0.49 -0.2
87,039 - PS417_00440 0.49 +4.1
87,190 + PS417_00440 0.69 -0.8
87,231 + PS417_00440 0.74 -0.5
87,231 + PS417_00440 0.74 +0.5
87,232 - PS417_00440 0.74 -1.1
87,232 - PS417_00440 0.74 -0.4
87,447 + -0.2
87,447 + +0.3
87,447 + -0.2
87,448 - -1.4
87,448 - +0.8
87,448 - -0.6
87,448 - -0.3
87,478 - -0.3
87,600 + +2.1
87,753 + PS417_00445 0.18 -0.2
87,754 - PS417_00445 0.18 +0.4
87,783 - PS417_00445 0.20 +1.3
87,783 - PS417_00445 0.20 -0.5
87,783 - PS417_00445 0.20 -0.8
87,783 - PS417_00445 0.20 -1.1
88,073 + PS417_00445 0.36 +0.8
88,076 + PS417_00445 0.36 -0.2
88,150 + PS417_00445 0.40 -0.4
88,151 - PS417_00445 0.40 +0.2
88,186 - PS417_00445 0.42 -0.1
88,186 - PS417_00445 0.42 -0.5
88,296 - PS417_00445 0.49 -0.3
88,428 - PS417_00445 0.56 -0.2
88,428 - PS417_00445 0.56 -0.1

Or see this region's nucleotide sequence