Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04330 and PS417_04335 are separated by 2 nucleotides PS417_04335 and PS417_04340 are separated by 10 nucleotides PS417_04340 and PS417_04345 are separated by 75 nucleotides
PS417_04330: PS417_04330 - glmZ(sRNA)-inactivating NTPase, at 969,341 to 970,198
_04330
PS417_04335: PS417_04335 - PTS fructose transporter subunit IIA, at 970,201 to 970,665
_04335
PS417_04340: PS417_04340 - ribosome hibernation promoting factor HPF, at 970,676 to 970,981
_04340
PS417_04345: PS417_04345 - RNA polymerase factor sigma-54, at 971,057 to 972,550
_04345
Position (kb) 970
971 Strain fitness (log2 ratio) -2
-1
0
1 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.927 kb on - strand, within PS417_04340 at 970.953 kb on - strand at 970.953 kb on - strand at 970.953 kb on - strand at 970.982 kb on - strand at 970.982 kb on - strand at 971.021 kb on - strand at 971.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 970,771 - PS417_04340 0.31 -1.0 970,771 - PS417_04340 0.31 -0.8 970,771 - PS417_04340 0.31 +0.3 970,771 - PS417_04340 0.31 +0.3 970,771 - PS417_04340 0.31 +0.7 970,771 - PS417_04340 0.31 -1.1 970,771 - PS417_04340 0.31 -1.9 970,771 - PS417_04340 0.31 -1.6 970,771 - PS417_04340 0.31 -0.6 970,771 - PS417_04340 0.31 -1.1 970,927 - PS417_04340 0.82 -1.4 970,953 - -0.5 970,953 - -0.1 970,953 - -1.0 970,982 - +0.2 970,982 - -1.1 971,021 - -1.6 971,027 - -1.9
Or see this region's nucleotide sequence