Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02730 and PS417_02735 are separated by 201 nucleotides PS417_02735 and PS417_02740 are separated by 98 nucleotides PS417_02740 and PS417_02745 are separated by 136 nucleotides PS417_02745 and PS417_02750 are separated by 80 nucleotides
PS417_02730: PS417_02730 - hypothetical protein, at 621,731 to 623,800
_02730
PS417_02735: PS417_02735 - bacterioferritin, at 624,002 to 624,532
_02735
PS417_02740: PS417_02740 - LysR family transcriptional regulator, at 624,631 to 625,530
_02740
PS417_02745: PS417_02745 - FMN-dependent NADH-azoreductase, at 625,667 to 626,308
_02745
PS417_02750: PS417_02750 - alpha/beta hydrolase, at 626,389 to 627,279
_02750
Position (kb)
624
625
626 Strain fitness (log2 ratio)
-1
0
1 at 623.830 kb on + strand at 623.883 kb on + strand at 623.884 kb on - strand at 623.896 kb on - strand at 623.902 kb on + strand at 623.902 kb on + strand at 623.903 kb on - strand at 623.903 kb on - strand at 623.903 kb on - strand at 623.933 kb on - strand at 623.949 kb on + strand at 623.950 kb on - strand at 624.003 kb on + strand at 624.020 kb on - strand at 624.094 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.163 kb on - strand, within PS417_02735 at 624.196 kb on - strand, within PS417_02735 at 624.263 kb on - strand, within PS417_02735 at 624.360 kb on + strand, within PS417_02735 at 624.380 kb on + strand, within PS417_02735 at 624.381 kb on - strand, within PS417_02735 at 624.546 kb on + strand at 625.028 kb on + strand, within PS417_02740 at 625.028 kb on + strand, within PS417_02740 at 625.029 kb on - strand, within PS417_02740 at 625.663 kb on - strand at 626.186 kb on + strand, within PS417_02745 at 626.187 kb on - strand, within PS417_02745 at 626.187 kb on - strand at 626.247 kb on + strand at 626.247 kb on + strand at 626.248 kb on - strand at 626.248 kb on - strand at 626.261 kb on + strand at 626.261 kb on + strand at 626.262 kb on - strand at 626.307 kb on - strand at 626.347 kb on + strand at 626.348 kb on - strand at 626.358 kb on + strand at 626.358 kb on + strand at 626.359 kb on - strand at 626.359 kb on - strand at 626.359 kb on - strand at 626.361 kb on + strand at 626.361 kb on + strand at 626.361 kb on + strand at 626.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 623,830 + -1.1 623,883 + -0.1 623,884 - -0.1 623,896 - +0.0 623,902 + -0.2 623,902 + +0.3 623,903 - +0.5 623,903 - -0.0 623,903 - +0.1 623,933 - -0.5 623,949 + +0.5 623,950 - -0.3 624,003 + +0.5 624,020 - +0.7 624,094 + PS417_02735 0.17 +0.3 624,105 + PS417_02735 0.19 -0.1 624,105 + PS417_02735 0.19 -0.3 624,105 + PS417_02735 0.19 -0.3 624,106 - PS417_02735 0.20 -0.2 624,106 - PS417_02735 0.20 +0.3 624,106 - PS417_02735 0.20 +0.1 624,163 - PS417_02735 0.30 +0.3 624,196 - PS417_02735 0.37 -0.2 624,263 - PS417_02735 0.49 +0.9 624,360 + PS417_02735 0.67 +0.7 624,380 + PS417_02735 0.71 -0.4 624,381 - PS417_02735 0.71 -0.0 624,546 + -0.2 625,028 + PS417_02740 0.44 -0.4 625,028 + PS417_02740 0.44 -0.5 625,029 - PS417_02740 0.44 -1.1 625,663 - -0.2 626,186 + PS417_02745 0.81 +0.6 626,187 - PS417_02745 0.81 +0.1 626,187 - -0.8 626,247 + -0.3 626,247 + +0.5 626,248 - -0.1 626,248 - -0.5 626,261 + +0.2 626,261 + +0.5 626,262 - +0.6 626,307 - +0.0 626,347 + -0.1 626,348 - +0.3 626,358 + +0.2 626,358 + -1.3 626,359 - -0.8 626,359 - +0.0 626,359 - +0.1 626,361 + +0.7 626,361 + +1.0 626,361 + -1.1 626,362 - +1.5
Or see this region's nucleotide sequence