Strain Fitness in Pseudomonas simiae WCS417 around PS417_02740

Experiment: R2A with Fusaric 120 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_02730 and PS417_02735 are separated by 201 nucleotidesPS417_02735 and PS417_02740 are separated by 98 nucleotidesPS417_02740 and PS417_02745 are separated by 136 nucleotidesPS417_02745 and PS417_02750 are separated by 80 nucleotides PS417_02730: PS417_02730 - hypothetical protein, at 621,731 to 623,800 _02730 PS417_02735: PS417_02735 - bacterioferritin, at 624,002 to 624,532 _02735 PS417_02740: PS417_02740 - LysR family transcriptional regulator, at 624,631 to 625,530 _02740 PS417_02745: PS417_02745 - FMN-dependent NADH-azoreductase, at 625,667 to 626,308 _02745 PS417_02750: PS417_02750 - alpha/beta hydrolase, at 626,389 to 627,279 _02750 Position (kb) 624 625 626Strain fitness (log2 ratio) -1 0 1at 623.830 kb on + strandat 623.883 kb on + strandat 623.884 kb on - strandat 623.896 kb on - strandat 623.902 kb on + strandat 623.902 kb on + strandat 623.903 kb on - strandat 623.903 kb on - strandat 623.903 kb on - strandat 623.933 kb on - strandat 623.949 kb on + strandat 623.950 kb on - strandat 624.003 kb on + strandat 624.020 kb on - strandat 624.094 kb on + strand, within PS417_02735at 624.105 kb on + strand, within PS417_02735at 624.105 kb on + strand, within PS417_02735at 624.105 kb on + strand, within PS417_02735at 624.106 kb on - strand, within PS417_02735at 624.106 kb on - strand, within PS417_02735at 624.106 kb on - strand, within PS417_02735at 624.163 kb on - strand, within PS417_02735at 624.196 kb on - strand, within PS417_02735at 624.263 kb on - strand, within PS417_02735at 624.360 kb on + strand, within PS417_02735at 624.380 kb on + strand, within PS417_02735at 624.381 kb on - strand, within PS417_02735at 624.546 kb on + strandat 625.028 kb on + strand, within PS417_02740at 625.028 kb on + strand, within PS417_02740at 625.029 kb on - strand, within PS417_02740at 625.663 kb on - strandat 626.186 kb on + strand, within PS417_02745at 626.187 kb on - strand, within PS417_02745at 626.187 kb on - strandat 626.247 kb on + strandat 626.247 kb on + strandat 626.248 kb on - strandat 626.248 kb on - strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.262 kb on - strandat 626.307 kb on - strandat 626.347 kb on + strandat 626.348 kb on - strandat 626.358 kb on + strandat 626.358 kb on + strandat 626.359 kb on - strandat 626.359 kb on - strandat 626.359 kb on - strandat 626.361 kb on + strandat 626.361 kb on + strandat 626.361 kb on + strandat 626.362 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
remove
623,830 + -1.1
623,883 + -0.1
623,884 - -0.1
623,896 - +0.0
623,902 + -0.2
623,902 + +0.3
623,903 - +0.5
623,903 - -0.0
623,903 - +0.1
623,933 - -0.5
623,949 + +0.5
623,950 - -0.3
624,003 + +0.5
624,020 - +0.7
624,094 + PS417_02735 0.17 +0.3
624,105 + PS417_02735 0.19 -0.1
624,105 + PS417_02735 0.19 -0.3
624,105 + PS417_02735 0.19 -0.3
624,106 - PS417_02735 0.20 -0.2
624,106 - PS417_02735 0.20 +0.3
624,106 - PS417_02735 0.20 +0.1
624,163 - PS417_02735 0.30 +0.3
624,196 - PS417_02735 0.37 -0.2
624,263 - PS417_02735 0.49 +0.9
624,360 + PS417_02735 0.67 +0.7
624,380 + PS417_02735 0.71 -0.4
624,381 - PS417_02735 0.71 -0.0
624,546 + -0.2
625,028 + PS417_02740 0.44 -0.4
625,028 + PS417_02740 0.44 -0.5
625,029 - PS417_02740 0.44 -1.1
625,663 - -0.2
626,186 + PS417_02745 0.81 +0.6
626,187 - PS417_02745 0.81 +0.1
626,187 - -0.8
626,247 + -0.3
626,247 + +0.5
626,248 - -0.1
626,248 - -0.5
626,261 + +0.2
626,261 + +0.5
626,262 - +0.6
626,307 - +0.0
626,347 + -0.1
626,348 - +0.3
626,358 + +0.2
626,358 + -1.3
626,359 - -0.8
626,359 - +0.0
626,359 - +0.1
626,361 + +0.7
626,361 + +1.0
626,361 + -1.1
626,362 - +1.5

Or see this region's nucleotide sequence