Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02685 and PS417_02690 overlap by 29 nucleotides PS417_02690 and PS417_02695 are separated by 181 nucleotides PS417_02695 and PS417_02700 are separated by 22 nucleotides
PS417_02685: PS417_02685 - cation diffusion facilitator family transporter, at 614,785 to 615,690
_02685
PS417_02690: PS417_02690 - N-acylglucosamine 2-epimerase, at 615,662 to 616,780
_02690
PS417_02695: PS417_02695 - protein hupE, at 616,962 to 617,534
_02695
PS417_02700: PS417_02700 - urease accessory protein UreG, at 617,557 to 618,171
_02700
Position (kb) 615
616
617 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 614.718 kb on + strand at 614.718 kb on + strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.723 kb on + strand at 614.738 kb on - strand at 615.061 kb on + strand, within PS417_02685 at 615.061 kb on + strand, within PS417_02685 at 615.061 kb on + strand, within PS417_02685 at 615.062 kb on - strand, within PS417_02685 at 615.062 kb on - strand, within PS417_02685 at 615.134 kb on - strand, within PS417_02685 at 615.166 kb on + strand, within PS417_02685 at 615.166 kb on + strand, within PS417_02685 at 615.167 kb on - strand, within PS417_02685 at 615.175 kb on + strand, within PS417_02685 at 615.176 kb on - strand, within PS417_02685 at 615.328 kb on + strand, within PS417_02685 at 615.328 kb on + strand, within PS417_02685 at 615.329 kb on - strand, within PS417_02685 at 615.413 kb on + strand, within PS417_02685 at 615.413 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.506 kb on - strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.663 kb on + strand at 615.699 kb on + strand at 615.892 kb on + strand, within PS417_02690 at 615.893 kb on - strand, within PS417_02690 at 616.087 kb on + strand, within PS417_02690 at 616.088 kb on - strand, within PS417_02690 at 616.303 kb on - strand, within PS417_02690 at 616.480 kb on - strand, within PS417_02690 at 616.596 kb on + strand, within PS417_02690 at 616.597 kb on - strand, within PS417_02690 at 616.597 kb on - strand, within PS417_02690 at 616.671 kb on + strand at 616.808 kb on - strand at 616.808 kb on - strand at 616.890 kb on + strand at 616.890 kb on + strand at 616.904 kb on - strand at 617.311 kb on - strand, within PS417_02695
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 614,718 + +1.5 614,718 + +0.3 614,719 - +0.4 614,719 - +1.3 614,719 - -0.1 614,719 - -0.8 614,719 - +1.1 614,719 - -0.0 614,719 - -1.4 614,723 + -0.3 614,738 - -0.8 615,061 + PS417_02685 0.30 -0.3 615,061 + PS417_02685 0.30 +0.5 615,061 + PS417_02685 0.30 +0.0 615,062 - PS417_02685 0.31 +1.5 615,062 - PS417_02685 0.31 +0.6 615,134 - PS417_02685 0.39 +0.5 615,166 + PS417_02685 0.42 -1.7 615,166 + PS417_02685 0.42 +1.2 615,167 - PS417_02685 0.42 +0.2 615,175 + PS417_02685 0.43 +1.0 615,176 - PS417_02685 0.43 +0.2 615,328 + PS417_02685 0.60 +1.3 615,328 + PS417_02685 0.60 -0.3 615,329 - PS417_02685 0.60 -0.4 615,413 + PS417_02685 0.69 +0.1 615,413 + PS417_02685 0.69 +0.5 615,496 + PS417_02685 0.78 +0.0 615,496 + PS417_02685 0.78 -0.5 615,496 + PS417_02685 0.78 -0.3 615,496 + PS417_02685 0.78 -0.2 615,497 - PS417_02685 0.79 -0.4 615,497 - PS417_02685 0.79 -0.6 615,497 - PS417_02685 0.79 +0.3 615,497 - PS417_02685 0.79 +0.1 615,497 - PS417_02685 0.79 +0.3 615,506 - PS417_02685 0.80 +0.4 615,542 + PS417_02685 0.84 -0.0 615,542 + PS417_02685 0.84 -0.3 615,542 + PS417_02685 0.84 +0.3 615,543 - PS417_02685 0.84 -1.8 615,543 - PS417_02685 0.84 +0.0 615,543 - PS417_02685 0.84 +0.5 615,543 - PS417_02685 0.84 -0.2 615,543 - PS417_02685 0.84 +0.5 615,663 + -1.5 615,699 + -2.8 615,892 + PS417_02690 0.21 -4.3 615,893 - PS417_02690 0.21 -2.7 616,087 + PS417_02690 0.38 +0.0 616,088 - PS417_02690 0.38 -2.0 616,303 - PS417_02690 0.57 -2.8 616,480 - PS417_02690 0.73 -2.2 616,596 + PS417_02690 0.83 -1.1 616,597 - PS417_02690 0.84 -2.8 616,597 - PS417_02690 0.84 -2.6 616,671 + -2.2 616,808 - +0.2 616,808 - -0.2 616,890 + -0.3 616,890 + -0.2 616,904 - -0.2 617,311 - PS417_02695 0.61 -0.4
Or see this region's nucleotide sequence