Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26740 and PS417_26745 are separated by 7 nucleotides PS417_26745 and PS417_26750 are separated by 21 nucleotides PS417_26750 and PS417_26755 overlap by 4 nucleotides PS417_26755 and PS417_26760 overlap by 4 nucleotides
PS417_26740: PS417_26740 - homoserine acetyltransferase, at 5,778,157 to 5,779,296
_26740
PS417_26745: PS417_26745 - methionine biosynthesis protein MetW, at 5,779,304 to 5,779,924
_26745
PS417_26750: PS417_26750 - homoserine acetyltransferase, at 5,779,946 to 5,780,380
_26750
PS417_26755: PS417_26755 - nucleoside-triphosphate diphosphatase, at 5,780,377 to 5,780,973
_26755
PS417_26760: PS417_26760 - oxidase, at 5,780,970 to 5,782,172
_26760
Position (kb) 5779
5780
5781 Strain fitness (log2 ratio) -2
-1
0
1 at 5778.955 kb on + strand, within PS417_26740 at 5779.033 kb on + strand, within PS417_26740 at 5779.196 kb on - strand at 5779.196 kb on - strand at 5779.252 kb on + strand at 5779.253 kb on - strand at 5779.273 kb on + strand at 5779.274 kb on - strand at 5779.709 kb on + strand, within PS417_26745 at 5779.719 kb on - strand, within PS417_26745 at 5779.719 kb on - strand, within PS417_26745 at 5779.719 kb on - strand, within PS417_26745 at 5779.719 kb on - strand, within PS417_26745 at 5779.841 kb on - strand, within PS417_26745 at 5779.845 kb on + strand, within PS417_26745 at 5779.845 kb on + strand, within PS417_26745 at 5779.845 kb on + strand, within PS417_26745 at 5779.845 kb on + strand, within PS417_26745 at 5779.922 kb on + strand at 5779.923 kb on - strand at 5780.012 kb on - strand, within PS417_26750 at 5780.013 kb on + strand, within PS417_26750 at 5780.013 kb on + strand, within PS417_26750 at 5780.014 kb on - strand, within PS417_26750 at 5780.057 kb on + strand, within PS417_26750 at 5780.058 kb on - strand, within PS417_26750 at 5780.115 kb on + strand, within PS417_26750 at 5780.308 kb on + strand, within PS417_26750 at 5780.388 kb on + strand at 5780.400 kb on - strand at 5780.632 kb on + strand, within PS417_26755 at 5780.845 kb on + strand, within PS417_26755 at 5781.061 kb on - strand at 5781.147 kb on + strand, within PS417_26760 at 5781.147 kb on + strand, within PS417_26760 at 5781.148 kb on - strand, within PS417_26760 at 5781.148 kb on - strand, within PS417_26760
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 5,778,955 + PS417_26740 0.70 -0.5 5,779,033 + PS417_26740 0.77 +0.1 5,779,196 - -0.3 5,779,196 - +0.5 5,779,252 + -0.3 5,779,253 - +0.1 5,779,273 + -0.1 5,779,274 - +0.1 5,779,709 + PS417_26745 0.65 -0.5 5,779,719 - PS417_26745 0.67 -0.5 5,779,719 - PS417_26745 0.67 -0.1 5,779,719 - PS417_26745 0.67 +0.3 5,779,719 - PS417_26745 0.67 -0.0 5,779,841 - PS417_26745 0.86 +1.5 5,779,845 + PS417_26745 0.87 -2.4 5,779,845 + PS417_26745 0.87 -1.2 5,779,845 + PS417_26745 0.87 -1.6 5,779,845 + PS417_26745 0.87 -0.9 5,779,922 + -0.9 5,779,923 - +1.3 5,780,012 - PS417_26750 0.15 +0.4 5,780,013 + PS417_26750 0.15 +0.6 5,780,013 + PS417_26750 0.15 +0.4 5,780,014 - PS417_26750 0.16 +0.8 5,780,057 + PS417_26750 0.26 +0.5 5,780,058 - PS417_26750 0.26 +1.3 5,780,115 + PS417_26750 0.39 +0.6 5,780,308 + PS417_26750 0.83 +0.9 5,780,388 + -0.6 5,780,400 - +0.2 5,780,632 + PS417_26755 0.43 -1.2 5,780,845 + PS417_26755 0.78 -0.3 5,781,061 - +0.6 5,781,147 + PS417_26760 0.15 -0.6 5,781,147 + PS417_26760 0.15 -0.8 5,781,148 - PS417_26760 0.15 -2.1 5,781,148 - PS417_26760 0.15 -0.3
Or see this region's nucleotide sequence