Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02555 and PS417_02560 overlap by 4 nucleotides PS417_02560 and PS417_02565 are separated by 309 nucleotides PS417_02565 and PS417_02570 are separated by 28 nucleotides
PS417_02555: PS417_02555 - exoribonuclease R, at 581,952 to 584,579
_02555
PS417_02560: PS417_02560 - 23S rRNA methyltransferase, at 584,576 to 585,331
_02560
PS417_02565: PS417_02565 - 30S ribosomal protein S6, at 585,641 to 586,063
_02565
PS417_02570: PS417_02570 - 30S ribosomal protein S18, at 586,092 to 586,322
_02570
Position (kb) 584
585
586 Strain fitness (log2 ratio) -2
-1
0
1
2 at 583.641 kb on + strand, within PS417_02555 at 583.686 kb on + strand, within PS417_02555 at 583.686 kb on + strand, within PS417_02555 at 583.687 kb on - strand, within PS417_02555 at 583.687 kb on - strand, within PS417_02555 at 583.687 kb on - strand, within PS417_02555 at 583.687 kb on - strand, within PS417_02555 at 583.697 kb on + strand, within PS417_02555 at 583.697 kb on + strand, within PS417_02555 at 583.697 kb on + strand, within PS417_02555 at 583.697 kb on + strand, within PS417_02555 at 583.698 kb on - strand, within PS417_02555 at 583.698 kb on - strand, within PS417_02555 at 583.824 kb on + strand, within PS417_02555 at 583.830 kb on + strand, within PS417_02555 at 584.019 kb on + strand, within PS417_02555 at 584.019 kb on + strand, within PS417_02555 at 584.019 kb on + strand, within PS417_02555 at 584.019 kb on + strand, within PS417_02555 at 584.019 kb on + strand, within PS417_02555 at 584.020 kb on - strand, within PS417_02555 at 584.061 kb on + strand, within PS417_02555 at 584.061 kb on + strand, within PS417_02555 at 584.061 kb on + strand, within PS417_02555 at 584.062 kb on - strand, within PS417_02555 at 584.064 kb on + strand, within PS417_02555 at 584.065 kb on - strand, within PS417_02555 at 584.065 kb on - strand, within PS417_02555 at 584.441 kb on + strand at 584.496 kb on - strand at 584.610 kb on + strand at 584.758 kb on - strand, within PS417_02560 at 585.125 kb on + strand, within PS417_02560 at 585.126 kb on - strand, within PS417_02560 at 585.126 kb on - strand, within PS417_02560 at 585.330 kb on - strand at 585.388 kb on + strand at 585.463 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 583,641 + PS417_02555 0.64 -0.5 583,686 + PS417_02555 0.66 +1.2 583,686 + PS417_02555 0.66 -0.2 583,687 - PS417_02555 0.66 -0.5 583,687 - PS417_02555 0.66 +1.0 583,687 - PS417_02555 0.66 +0.9 583,687 - PS417_02555 0.66 +0.6 583,697 + PS417_02555 0.66 +1.5 583,697 + PS417_02555 0.66 +0.4 583,697 + PS417_02555 0.66 +0.3 583,697 + PS417_02555 0.66 +1.2 583,698 - PS417_02555 0.66 -0.0 583,698 - PS417_02555 0.66 +1.5 583,824 + PS417_02555 0.71 +0.5 583,830 + PS417_02555 0.71 +0.9 584,019 + PS417_02555 0.79 -0.1 584,019 + PS417_02555 0.79 +0.5 584,019 + PS417_02555 0.79 +0.2 584,019 + PS417_02555 0.79 +0.0 584,019 + PS417_02555 0.79 +0.4 584,020 - PS417_02555 0.79 -0.1 584,061 + PS417_02555 0.80 +0.2 584,061 + PS417_02555 0.80 -0.7 584,061 + PS417_02555 0.80 +0.6 584,062 - PS417_02555 0.80 -0.1 584,064 + PS417_02555 0.80 +1.7 584,065 - PS417_02555 0.80 -0.8 584,065 - PS417_02555 0.80 +0.7 584,441 + +1.3 584,496 - +0.2 584,610 + -0.9 584,758 - PS417_02560 0.24 -0.1 585,125 + PS417_02560 0.73 -0.5 585,126 - PS417_02560 0.73 -1.8 585,126 - PS417_02560 0.73 +2.1 585,330 - -0.5 585,388 + -1.1 585,463 + +0.0
Or see this region's nucleotide sequence