Strain Fitness in Pseudomonas simiae WCS417 around PS417_21825

Experiment: R2A with Fusaric 120 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21815 and PS417_21820 are separated by 97 nucleotidesPS417_21820 and PS417_21825 are separated by 327 nucleotidesPS417_21825 and PS417_21830 are separated by 123 nucleotidesPS417_21830 and PS417_21835 are separated by 190 nucleotides PS417_21815: PS417_21815 - amidase, at 4,736,760 to 4,738,262 _21815 PS417_21820: PS417_21820 - hypothetical protein, at 4,738,360 to 4,738,902 _21820 PS417_21825: PS417_21825 - hydrolase, at 4,739,230 to 4,740,279 _21825 PS417_21830: PS417_21830 - TetR family transcriptional regulator, at 4,740,403 to 4,741,029 _21830 PS417_21835: PS417_21835 - histidine kinase, at 4,741,220 to 4,742,269 _21835 Position (kb) 4739 4740 4741Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4738.262 kb on + strandat 4738.262 kb on + strandat 4738.262 kb on + strandat 4738.263 kb on - strandat 4738.263 kb on - strandat 4738.263 kb on - strandat 4738.438 kb on + strand, within PS417_21820at 4738.870 kb on + strandat 4738.871 kb on - strandat 4738.995 kb on + strandat 4738.995 kb on + strandat 4738.996 kb on - strandat 4739.083 kb on + strandat 4739.083 kb on + strandat 4739.083 kb on + strandat 4739.084 kb on - strandat 4739.086 kb on - strandat 4739.112 kb on + strandat 4739.112 kb on + strandat 4739.112 kb on + strandat 4739.112 kb on + strandat 4739.121 kb on + strandat 4739.126 kb on - strandat 4739.341 kb on - strand, within PS417_21825at 4739.460 kb on + strand, within PS417_21825at 4739.516 kb on + strandat 4739.516 kb on + strand, within PS417_21825at 4739.516 kb on + strand, within PS417_21825at 4739.516 kb on + strand, within PS417_21825at 4739.516 kb on + strand, within PS417_21825at 4739.517 kb on - strand, within PS417_21825at 4739.517 kb on - strand, within PS417_21825at 4739.517 kb on - strand, within PS417_21825at 4739.517 kb on - strand, within PS417_21825at 4739.517 kb on - strand, within PS417_21825at 4739.517 kb on - strand, within PS417_21825at 4739.517 kb on - strand, within PS417_21825at 4739.517 kb on - strand, within PS417_21825at 4739.588 kb on + strand, within PS417_21825at 4739.874 kb on - strand, within PS417_21825at 4740.154 kb on - strand, within PS417_21825at 4740.154 kb on - strand, within PS417_21825at 4740.154 kb on - strand, within PS417_21825at 4740.154 kb on - strand, within PS417_21825at 4740.281 kb on + strandat 4740.282 kb on - strandat 4740.282 kb on - strandat 4740.294 kb on + strandat 4740.295 kb on - strandat 4740.295 kb on - strandat 4740.326 kb on + strandat 4740.327 kb on - strandat 4740.544 kb on + strand, within PS417_21830at 4740.921 kb on + strand, within PS417_21830at 4740.922 kb on - strand, within PS417_21830at 4741.113 kb on - strandat 4741.137 kb on - strandat 4741.146 kb on + strandat 4741.147 kb on - strandat 4741.147 kb on - strandat 4741.147 kb on - strandat 4741.195 kb on + strandat 4741.195 kb on + strandat 4741.196 kb on - strandat 4741.261 kb on + strandat 4741.261 kb on + strandat 4741.262 kb on - strandat 4741.262 kb on - strandat 4741.265 kb on + strandat 4741.265 kb on + strandat 4741.266 kb on - strandat 4741.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
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4,738,262 + -1.3
4,738,262 + -0.2
4,738,262 + +0.3
4,738,263 - -0.6
4,738,263 - +0.2
4,738,263 - +0.7
4,738,438 + PS417_21820 0.14 -0.6
4,738,870 + -2.5
4,738,871 - +0.4
4,738,995 + +1.9
4,738,995 + +0.4
4,738,996 - -0.5
4,739,083 + -0.1
4,739,083 + -0.6
4,739,083 + +0.5
4,739,084 - -0.2
4,739,086 - -0.7
4,739,112 + +0.0
4,739,112 + -0.6
4,739,112 + +1.3
4,739,112 + -0.3
4,739,121 + +0.4
4,739,126 - -0.2
4,739,341 - PS417_21825 0.11 -1.6
4,739,460 + PS417_21825 0.22 -1.5
4,739,516 + +1.4
4,739,516 + PS417_21825 0.27 -1.0
4,739,516 + PS417_21825 0.27 -0.7
4,739,516 + PS417_21825 0.27 -0.6
4,739,516 + PS417_21825 0.27 -0.9
4,739,517 - PS417_21825 0.27 -0.8
4,739,517 - PS417_21825 0.27 -0.2
4,739,517 - PS417_21825 0.27 -0.6
4,739,517 - PS417_21825 0.27 -0.6
4,739,517 - PS417_21825 0.27 -1.0
4,739,517 - PS417_21825 0.27 -0.4
4,739,517 - PS417_21825 0.27 -1.7
4,739,517 - PS417_21825 0.27 -0.6
4,739,588 + PS417_21825 0.34 -0.0
4,739,874 - PS417_21825 0.61 -0.4
4,740,154 - PS417_21825 0.88 -1.0
4,740,154 - PS417_21825 0.88 -1.0
4,740,154 - PS417_21825 0.88 -0.9
4,740,154 - PS417_21825 0.88 -1.0
4,740,281 + -1.8
4,740,282 - -0.2
4,740,282 - -0.9
4,740,294 + -0.6
4,740,295 - +0.4
4,740,295 - -0.6
4,740,326 + -0.2
4,740,327 - +0.6
4,740,544 + PS417_21830 0.22 +2.9
4,740,921 + PS417_21830 0.83 +2.6
4,740,922 - PS417_21830 0.83 +2.6
4,741,113 - +0.2
4,741,137 - +0.1
4,741,146 + -0.5
4,741,147 - +0.2
4,741,147 - +0.7
4,741,147 - +1.8
4,741,195 + -0.4
4,741,195 + +0.4
4,741,196 - -1.9
4,741,261 + +0.3
4,741,261 + +0.1
4,741,262 - +0.3
4,741,262 - +1.3
4,741,265 + -0.4
4,741,265 + -0.1
4,741,266 - -0.0
4,741,266 - -0.2

Or see this region's nucleotide sequence