Strain Fitness in Pseudomonas simiae WCS417 around PS417_17645
Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Fusaric 120 ug/mL |
---|---|---|---|---|---|
remove | |||||
3,850,889 | + | PS417_17640 | 0.49 | -0.1 | |
3,850,893 | + | PS417_17640 | 0.49 | -0.2 | |
3,851,040 | + | PS417_17640 | 0.57 | +0.3 | |
3,851,040 | + | PS417_17640 | 0.57 | -0.7 | |
3,851,049 | + | PS417_17640 | 0.57 | -0.1 | |
3,851,050 | - | PS417_17640 | 0.57 | +0.5 | |
3,851,087 | + | PS417_17640 | 0.59 | +0.0 | |
3,851,112 | + | +0.8 | |||
3,851,349 | + | PS417_17640 | 0.72 | -0.1 | |
3,851,349 | + | PS417_17640 | 0.72 | -0.2 | |
3,851,350 | - | PS417_17640 | 0.72 | +0.4 | |
3,851,350 | - | PS417_17640 | 0.72 | -0.2 | |
3,851,361 | + | PS417_17640 | 0.73 | -0.3 | |
3,851,362 | - | PS417_17640 | 0.73 | -0.1 | |
3,851,458 | - | +1.8 | |||
3,851,579 | + | PS417_17640 | 0.84 | +0.5 | |
3,851,580 | - | PS417_17640 | 0.84 | -0.4 | |
3,852,503 | + | PS417_17645 | 0.44 | -2.2 | |
3,852,892 | + | PS417_17645 | 0.72 | -0.4 | |
3,852,995 | - | PS417_17645 | 0.79 | -0.3 | |
3,853,229 | + | -0.4 | |||
3,853,330 | + | -0.4 | |||
3,853,331 | - | -0.6 | |||
3,853,682 | + | PS417_17650 | 0.39 | +0.8 | |
3,853,738 | - | PS417_17650 | 0.46 | -0.4 | |
3,853,848 | + | PS417_17650 | 0.61 | -0.4 | |
3,853,885 | - | PS417_17650 | 0.66 | -0.9 | |
3,854,246 | - | +0.1 | |||
3,854,246 | - | +0.4 | |||
3,854,251 | - | -0.2 |
Or see this region's nucleotide sequence