Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17150 and PS417_17155 are separated by 114 nucleotides PS417_17155 and PS417_17160 overlap by 11 nucleotides PS417_17160 and PS417_17165 are separated by 57 nucleotides
PS417_17150: PS417_17150 - phosphonoacetaldehyde hydrolase, at 3,745,056 to 3,745,883
_17150
PS417_17155: PS417_17155 - cytochrome B561, at 3,745,998 to 3,746,555
_17155
PS417_17160: PS417_17160 - 1-aminocyclopropane-1-carboxylate deaminase, at 3,746,545 to 3,747,429
_17160
PS417_17165: PS417_17165 - 2,4-dienoyl-CoA reductase, at 3,747,487 to 3,749,526
_17165
Position (kb)
3746
3747
3748 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3745.707 kb on + strand, within PS417_17150 at 3745.707 kb on + strand, within PS417_17150 at 3745.707 kb on + strand, within PS417_17150 at 3745.708 kb on - strand, within PS417_17150 at 3745.794 kb on + strand, within PS417_17150 at 3745.794 kb on + strand, within PS417_17150 at 3745.941 kb on - strand at 3746.025 kb on + strand at 3746.082 kb on + strand, within PS417_17155 at 3746.083 kb on - strand, within PS417_17155 at 3746.083 kb on - strand, within PS417_17155 at 3746.099 kb on - strand, within PS417_17155 at 3746.361 kb on + strand, within PS417_17155 at 3746.666 kb on + strand, within PS417_17160 at 3746.667 kb on - strand, within PS417_17160 at 3746.785 kb on + strand, within PS417_17160 at 3747.722 kb on + strand, within PS417_17165 at 3748.061 kb on + strand, within PS417_17165 at 3748.062 kb on - strand, within PS417_17165 at 3748.062 kb on - strand, within PS417_17165 at 3748.227 kb on - strand, within PS417_17165 at 3748.415 kb on + strand, within PS417_17165
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 3,745,707 + PS417_17150 0.79 +1.0 3,745,707 + PS417_17150 0.79 -0.2 3,745,707 + PS417_17150 0.79 -0.5 3,745,708 - PS417_17150 0.79 -0.4 3,745,794 + PS417_17150 0.89 -0.1 3,745,794 + PS417_17150 0.89 -0.1 3,745,941 - +2.9 3,746,025 + -1.2 3,746,082 + PS417_17155 0.15 -1.2 3,746,083 - PS417_17155 0.15 +0.3 3,746,083 - PS417_17155 0.15 -0.7 3,746,099 - PS417_17155 0.18 -1.2 3,746,361 + PS417_17155 0.65 -0.4 3,746,666 + PS417_17160 0.14 -0.5 3,746,667 - PS417_17160 0.14 -0.5 3,746,785 + PS417_17160 0.27 -0.7 3,747,722 + PS417_17165 0.12 +0.3 3,748,061 + PS417_17165 0.28 +0.3 3,748,062 - PS417_17165 0.28 -0.1 3,748,062 - PS417_17165 0.28 -1.2 3,748,227 - PS417_17165 0.36 +0.2 3,748,415 + PS417_17165 0.45 -0.2
Or see this region's nucleotide sequence