Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01505 and PS417_01510 are separated by 108 nucleotides PS417_01510 and PS417_01515 are separated by 12 nucleotides
PS417_01505: PS417_01505 - gamma-aminobutyrate transporter, at 333,707 to 335,098
_01505
PS417_01510: PS417_01510 - hypothetical protein, at 335,207 to 335,620
_01510
PS417_01515: PS417_01515 - alpha/beta hydrolase, at 335,633 to 336,577
_01515
Position (kb) 335
336 Strain fitness (log2 ratio) -2
-1
0
1
2 at 334.409 kb on - strand, within PS417_01505 at 334.451 kb on + strand, within PS417_01505 at 334.451 kb on + strand, within PS417_01505 at 334.452 kb on - strand, within PS417_01505 at 334.452 kb on - strand, within PS417_01505 at 334.516 kb on - strand, within PS417_01505 at 334.622 kb on + strand, within PS417_01505 at 334.622 kb on + strand, within PS417_01505 at 334.623 kb on - strand, within PS417_01505 at 334.709 kb on + strand, within PS417_01505 at 334.710 kb on - strand, within PS417_01505 at 334.763 kb on + strand at 334.763 kb on + strand at 334.764 kb on - strand, within PS417_01505 at 334.829 kb on + strand, within PS417_01505 at 334.928 kb on + strand, within PS417_01505 at 334.928 kb on + strand, within PS417_01505 at 334.928 kb on + strand, within PS417_01505 at 334.991 kb on - strand at 335.088 kb on + strand at 335.097 kb on - strand at 335.100 kb on + strand at 335.305 kb on + strand, within PS417_01510 at 335.306 kb on - strand, within PS417_01510 at 335.347 kb on + strand, within PS417_01510 at 335.689 kb on + strand at 335.689 kb on + strand at 335.752 kb on - strand, within PS417_01515 at 335.795 kb on + strand at 335.796 kb on - strand, within PS417_01515 at 335.796 kb on - strand, within PS417_01515 at 335.844 kb on + strand, within PS417_01515 at 335.845 kb on - strand, within PS417_01515 at 335.852 kb on + strand, within PS417_01515 at 335.870 kb on + strand, within PS417_01515 at 335.941 kb on + strand, within PS417_01515 at 336.223 kb on + strand, within PS417_01515 at 336.224 kb on - strand, within PS417_01515 at 336.373 kb on - strand, within PS417_01515
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 334,409 - PS417_01505 0.50 +0.1 334,451 + PS417_01505 0.53 -0.3 334,451 + PS417_01505 0.53 -0.4 334,452 - PS417_01505 0.54 -0.1 334,452 - PS417_01505 0.54 +0.6 334,516 - PS417_01505 0.58 +1.4 334,622 + PS417_01505 0.66 -0.5 334,622 + PS417_01505 0.66 -0.1 334,623 - PS417_01505 0.66 -0.1 334,709 + PS417_01505 0.72 +0.3 334,710 - PS417_01505 0.72 +0.6 334,763 + +0.7 334,763 + +2.7 334,764 - PS417_01505 0.76 -0.6 334,829 + PS417_01505 0.81 +0.7 334,928 + PS417_01505 0.88 +0.9 334,928 + PS417_01505 0.88 +1.5 334,928 + PS417_01505 0.88 -0.4 334,991 - -0.2 335,088 + -0.0 335,097 - -0.6 335,100 + +0.2 335,305 + PS417_01510 0.24 -0.3 335,306 - PS417_01510 0.24 -0.2 335,347 + PS417_01510 0.34 +0.2 335,689 + +0.5 335,689 + -0.6 335,752 - PS417_01515 0.13 +1.1 335,795 + +1.1 335,796 - PS417_01515 0.17 -0.5 335,796 - PS417_01515 0.17 +0.3 335,844 + PS417_01515 0.22 +0.0 335,845 - PS417_01515 0.22 -1.3 335,852 + PS417_01515 0.23 -2.0 335,870 + PS417_01515 0.25 +0.4 335,941 + PS417_01515 0.33 +0.9 336,223 + PS417_01515 0.62 -0.4 336,224 - PS417_01515 0.63 -0.1 336,373 - PS417_01515 0.78 +1.5
Or see this region's nucleotide sequence