Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01485 and PS417_01490 are separated by 38 nucleotides PS417_01490 and PS417_01495 are separated by 74 nucleotides PS417_01495 and PS417_01500 are separated by 13 nucleotides
PS417_01485: PS417_01485 - ABC transporter permease, at 330,115 to 330,804
_01485
PS417_01490: PS417_01490 - ABC transporter permease, at 330,843 to 331,538
_01490
PS417_01495: PS417_01495 - amino acid ABC transporter, at 331,613 to 332,365
_01495
PS417_01500: PS417_01500 - amino acid transporter, at 332,379 to 333,152
_01500
Position (kb) 331
332
333 Strain fitness (log2 ratio) -2
-1
0
1
2 at 330.639 kb on - strand, within PS417_01485 at 330.644 kb on + strand, within PS417_01485 at 330.645 kb on - strand, within PS417_01485 at 330.662 kb on + strand, within PS417_01485 at 330.663 kb on - strand, within PS417_01485 at 330.663 kb on - strand, within PS417_01485 at 330.833 kb on + strand at 331.324 kb on + strand, within PS417_01490 at 331.324 kb on + strand, within PS417_01490 at 331.356 kb on - strand, within PS417_01490 at 331.375 kb on + strand, within PS417_01490 at 331.405 kb on + strand, within PS417_01490 at 331.406 kb on - strand, within PS417_01490 at 331.441 kb on - strand, within PS417_01490 at 331.635 kb on + strand at 331.635 kb on + strand at 331.635 kb on + strand at 331.636 kb on - strand at 331.636 kb on - strand at 331.656 kb on + strand at 331.656 kb on + strand at 331.657 kb on - strand at 331.752 kb on - strand, within PS417_01495 at 331.809 kb on + strand, within PS417_01495 at 331.818 kb on + strand, within PS417_01495 at 331.818 kb on + strand, within PS417_01495 at 331.818 kb on + strand, within PS417_01495 at 331.818 kb on + strand, within PS417_01495 at 331.819 kb on - strand, within PS417_01495 at 331.819 kb on - strand, within PS417_01495 at 331.819 kb on - strand, within PS417_01495 at 331.926 kb on + strand, within PS417_01495 at 331.926 kb on + strand, within PS417_01495 at 331.927 kb on - strand at 331.927 kb on - strand, within PS417_01495 at 332.041 kb on - strand, within PS417_01495 at 332.041 kb on - strand, within PS417_01495 at 332.160 kb on + strand, within PS417_01495 at 332.160 kb on + strand, within PS417_01495 at 332.160 kb on + strand, within PS417_01495 at 332.160 kb on + strand, within PS417_01495 at 332.160 kb on + strand, within PS417_01495 at 332.161 kb on - strand, within PS417_01495 at 332.161 kb on - strand, within PS417_01495 at 332.161 kb on - strand, within PS417_01495 at 332.161 kb on - strand, within PS417_01495 at 332.488 kb on + strand, within PS417_01500 at 332.573 kb on + strand, within PS417_01500 at 332.573 kb on + strand, within PS417_01500 at 332.573 kb on + strand, within PS417_01500 at 332.574 kb on - strand, within PS417_01500 at 332.574 kb on - strand, within PS417_01500 at 332.574 kb on - strand, within PS417_01500 at 332.636 kb on + strand, within PS417_01500 at 332.637 kb on - strand, within PS417_01500 at 333.077 kb on + strand at 333.087 kb on + strand at 333.103 kb on + strand at 333.104 kb on - strand at 333.218 kb on + strand at 333.218 kb on + strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.219 kb on - strand at 333.223 kb on + strand at 333.223 kb on + strand at 333.224 kb on - strand at 333.224 kb on - strand at 333.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 330,639 - PS417_01485 0.76 -0.3 330,644 + PS417_01485 0.77 +0.2 330,645 - PS417_01485 0.77 -0.3 330,662 + PS417_01485 0.79 +0.7 330,663 - PS417_01485 0.79 -0.1 330,663 - PS417_01485 0.79 -0.3 330,833 + +1.2 331,324 + PS417_01490 0.69 -1.8 331,324 + PS417_01490 0.69 -0.2 331,356 - PS417_01490 0.74 +0.1 331,375 + PS417_01490 0.76 -0.1 331,405 + PS417_01490 0.81 -0.1 331,406 - PS417_01490 0.81 -0.1 331,441 - PS417_01490 0.86 +0.5 331,635 + +0.5 331,635 + -1.3 331,635 + -1.5 331,636 - -2.0 331,636 - -2.3 331,656 + -1.3 331,656 + -2.5 331,657 - -1.2 331,752 - PS417_01495 0.18 -1.6 331,809 + PS417_01495 0.26 -2.4 331,818 + PS417_01495 0.27 -1.8 331,818 + PS417_01495 0.27 +1.9 331,818 + PS417_01495 0.27 -1.6 331,818 + PS417_01495 0.27 -2.1 331,819 - PS417_01495 0.27 -1.7 331,819 - PS417_01495 0.27 -1.1 331,819 - PS417_01495 0.27 -1.3 331,926 + PS417_01495 0.42 -1.7 331,926 + PS417_01495 0.42 -0.1 331,927 - +0.5 331,927 - PS417_01495 0.42 -0.9 332,041 - PS417_01495 0.57 -1.8 332,041 - PS417_01495 0.57 -1.8 332,160 + PS417_01495 0.73 -1.4 332,160 + PS417_01495 0.73 -1.4 332,160 + PS417_01495 0.73 -1.6 332,160 + PS417_01495 0.73 -1.3 332,160 + PS417_01495 0.73 -0.8 332,161 - PS417_01495 0.73 -2.0 332,161 - PS417_01495 0.73 -0.5 332,161 - PS417_01495 0.73 -2.1 332,161 - PS417_01495 0.73 -2.3 332,488 + PS417_01500 0.14 -1.1 332,573 + PS417_01500 0.25 -0.3 332,573 + PS417_01500 0.25 -0.9 332,573 + PS417_01500 0.25 -0.8 332,574 - PS417_01500 0.25 -0.5 332,574 - PS417_01500 0.25 -0.1 332,574 - PS417_01500 0.25 +0.3 332,636 + PS417_01500 0.33 -0.1 332,637 - PS417_01500 0.33 -0.4 333,077 + +0.1 333,087 + -0.1 333,103 + +0.1 333,104 - +0.4 333,218 + -0.5 333,218 + -0.5 333,219 - +0.1 333,219 - -0.7 333,219 - +1.5 333,219 - +1.5 333,219 - +0.2 333,219 - +0.2 333,223 + +0.7 333,223 + -0.1 333,224 - +0.8 333,224 - +0.3 333,224 - -0.5
Or see this region's nucleotide sequence