Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00965 and PS417_00970 are separated by 82 nucleotides PS417_00970 and PS417_00975 are separated by 15 nucleotides PS417_00975 and PS417_00985 are separated by 136 nucleotides
PS417_00965: PS417_00965 - AraC family transcriptional regulator, at 214,157 to 215,161
_00965
PS417_00970: PS417_00970 - hypothetical protein, at 215,244 to 216,023
_00970
PS417_00975: PS417_00975 - hypothetical protein, at 216,039 to 216,356
_00975
PS417_00985: PS417_00985 - MFS transporter, at 216,493 to 217,662
_00985
Position (kb) 216
217 Strain fitness (log2 ratio) -1
0
1 at 215.239 kb on - strand at 215.448 kb on + strand, within PS417_00970 at 215.449 kb on - strand, within PS417_00970 at 215.547 kb on + strand, within PS417_00970 at 215.548 kb on - strand, within PS417_00970 at 215.574 kb on - strand, within PS417_00970 at 215.832 kb on + strand, within PS417_00970 at 215.832 kb on + strand, within PS417_00970 at 215.833 kb on - strand, within PS417_00970 at 215.833 kb on - strand, within PS417_00970 at 215.868 kb on + strand, within PS417_00970 at 215.869 kb on - strand, within PS417_00970 at 215.869 kb on - strand, within PS417_00970 at 216.045 kb on + strand at 216.046 kb on - strand at 216.186 kb on + strand, within PS417_00975 at 216.186 kb on + strand, within PS417_00975 at 216.491 kb on - strand at 216.494 kb on + strand at 216.494 kb on + strand at 216.495 kb on - strand at 216.495 kb on - strand at 216.496 kb on + strand at 216.980 kb on + strand, within PS417_00985 at 217.010 kb on + strand, within PS417_00985 at 217.034 kb on + strand, within PS417_00985 at 217.257 kb on - strand, within PS417_00985
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 215,239 - -1.1 215,448 + PS417_00970 0.26 -1.3 215,449 - PS417_00970 0.26 +0.5 215,547 + PS417_00970 0.39 +0.2 215,548 - PS417_00970 0.39 -0.2 215,574 - PS417_00970 0.42 +0.7 215,832 + PS417_00970 0.75 -0.1 215,832 + PS417_00970 0.75 +0.0 215,833 - PS417_00970 0.76 -0.6 215,833 - PS417_00970 0.76 -0.1 215,868 + PS417_00970 0.80 +0.1 215,869 - PS417_00970 0.80 -0.3 215,869 - PS417_00970 0.80 +0.9 216,045 + +0.6 216,046 - -0.3 216,186 + PS417_00975 0.46 -1.1 216,186 + PS417_00975 0.46 -0.5 216,491 - -0.7 216,494 + -0.5 216,494 + -0.2 216,495 - -0.1 216,495 - -0.9 216,496 + -0.6 216,980 + PS417_00985 0.42 -0.2 217,010 + PS417_00985 0.44 +0.0 217,034 + PS417_00985 0.46 -1.2 217,257 - PS417_00985 0.65 +0.8
Or see this region's nucleotide sequence