Strain Fitness in Pseudomonas simiae WCS417 around PS417_06775
Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Fusaric 120 ug/mL |
---|---|---|---|---|---|
remove | |||||
1,500,673 | - | PS417_06770 | 0.74 | +1.4 | |
1,501,026 | + | PS417_06770 | 0.85 | -5.5 | |
1,501,026 | + | PS417_06770 | 0.85 | -1.6 | |
1,501,027 | - | PS417_06770 | 0.85 | -2.7 | |
1,501,250 | - | -1.7 | |||
1,501,250 | - | -3.8 | |||
1,501,250 | - | -5.3 | |||
1,501,675 | - | PS417_06775 | 0.15 | -2.6 | |
1,501,678 | + | PS417_06775 | 0.15 | -3.3 | |
1,501,679 | - | PS417_06775 | 0.16 | -3.9 | |
1,501,679 | - | PS417_06775 | 0.16 | -3.7 | |
1,501,679 | - | PS417_06775 | 0.16 | -4.8 | |
1,501,942 | - | PS417_06775 | 0.38 | -5.9 | |
1,502,257 | - | PS417_06775 | 0.66 | -2.0 | |
1,502,257 | - | PS417_06775 | 0.66 | -2.8 | |
1,502,299 | - | PS417_06775 | 0.69 | -1.1 | |
1,502,362 | - | PS417_06775 | 0.75 | -2.5 | |
1,502,383 | - | PS417_06775 | 0.77 | -2.5 | |
1,502,644 | + | -1.6 | |||
1,502,727 | - | +1.6 | |||
1,502,730 | + | -1.9 | |||
1,502,731 | - | +2.5 | |||
1,502,907 | - | +4.2 | |||
1,502,933 | + | +0.6 | |||
1,503,012 | + | PS417_06780 | 0.11 | +3.3 | |
1,503,085 | - | PS417_06780 | 0.23 | +3.2 | |
1,503,284 | + | PS417_06780 | 0.54 | +2.9 | |
1,503,447 | + | PS417_06780 | 0.80 | +2.1 | |
1,503,447 | + | PS417_06780 | 0.80 | +2.0 | |
1,503,448 | - | PS417_06780 | 0.80 | +3.9 | |
1,503,448 | - | PS417_06780 | 0.80 | +2.6 |
Or see this region's nucleotide sequence