Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04435 and PS417_04440 are separated by 164 nucleotides PS417_04440 and PS417_04445 are separated by 3 nucleotides PS417_04445 and PS417_04450 are separated by 35 nucleotides PS417_04450 and PS417_04455 are separated by 191 nucleotides
PS417_04435: PS417_04435 - uracil phosphoribosyltransferase, at 985,798 to 986,436
_04435
PS417_04440: PS417_04440 - hypoxanthine-guanine phosphoribosyltransferase, at 986,601 to 987,158
_04440
PS417_04445: PS417_04445 - cupin, at 987,162 to 987,629
_04445
PS417_04450: PS417_04450 - hypothetical protein, at 987,665 to 988,150
_04450
PS417_04455: PS417_04455 - aminopeptidase, at 988,342 to 988,629
_04455
Position (kb) 987
988 Strain fitness (log2 ratio) -1
0
1
2 at 986.176 kb on + strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.233 kb on - strand, within PS417_04435 at 986.283 kb on - strand, within PS417_04435 at 986.315 kb on + strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.367 kb on + strand, within PS417_04435 at 986.368 kb on - strand, within PS417_04435 at 986.385 kb on + strand at 986.386 kb on - strand at 986.477 kb on + strand at 986.478 kb on - strand at 986.500 kb on + strand at 986.500 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.503 kb on - strand at 986.510 kb on + strand at 986.510 kb on + strand at 986.511 kb on - strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.555 kb on + strand at 986.555 kb on + strand at 986.655 kb on + strand at 986.814 kb on + strand, within PS417_04440 at 987.055 kb on - strand, within PS417_04440 at 987.055 kb on - strand, within PS417_04440 at 987.105 kb on + strand at 987.114 kb on + strand at 987.138 kb on + strand at 987.156 kb on + strand at 987.156 kb on + strand at 987.156 kb on + strand at 987.157 kb on - strand at 987.157 kb on - strand at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.597 kb on + strand at 987.632 kb on + strand at 987.679 kb on - strand at 987.818 kb on - strand, within PS417_04450 at 987.818 kb on - strand, within PS417_04450 at 987.818 kb on - strand, within PS417_04450 at 987.989 kb on + strand, within PS417_04450 at 987.990 kb on - strand, within PS417_04450 at 987.998 kb on - strand, within PS417_04450 at 988.038 kb on - strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.077 kb on - strand, within PS417_04450 at 988.077 kb on - strand, within PS417_04450 at 988.081 kb on - strand, within PS417_04450 at 988.095 kb on - strand, within PS417_04450 at 988.108 kb on + strand at 988.108 kb on + strand at 988.109 kb on - strand at 988.109 kb on - strand at 988.122 kb on + strand at 988.122 kb on + strand at 988.166 kb on - strand at 988.166 kb on - strand at 988.203 kb on + strand at 988.211 kb on - strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.299 kb on + strand at 988.318 kb on - strand at 988.318 kb on - strand at 988.585 kb on - strand, within PS417_04455
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 986,176 + PS417_04435 0.59 +0.1 986,177 - PS417_04435 0.59 -0.3 986,177 - PS417_04435 0.59 +1.3 986,177 - PS417_04435 0.59 +0.2 986,233 - PS417_04435 0.68 +0.3 986,283 - PS417_04435 0.76 +0.5 986,315 + PS417_04435 0.81 +0.0 986,316 - PS417_04435 0.81 -0.5 986,316 - PS417_04435 0.81 +0.0 986,367 + PS417_04435 0.89 -0.3 986,368 - PS417_04435 0.89 +0.2 986,385 + -0.1 986,386 - -0.0 986,477 + +0.1 986,478 - +0.0 986,500 + +0.8 986,500 + -0.5 986,502 + -0.9 986,502 + +0.2 986,502 + +0.2 986,502 + +0.2 986,502 + -0.2 986,502 + -0.4 986,503 - +1.8 986,510 + -0.3 986,510 + -0.4 986,511 - +2.1 986,513 + +0.9 986,513 + +0.6 986,513 + -0.3 986,513 + +0.0 986,514 - -0.6 986,514 - -0.9 986,514 - +0.4 986,514 - -1.2 986,555 + -0.5 986,555 + +0.3 986,655 + -0.3 986,814 + PS417_04440 0.38 +0.4 987,055 - PS417_04440 0.81 -0.2 987,055 - PS417_04440 0.81 +0.0 987,105 + +0.0 987,114 + -0.1 987,138 + +0.0 987,156 + +0.4 987,156 + -0.7 987,156 + +0.2 987,157 - +0.2 987,157 - -0.2 987,303 + PS417_04445 0.30 -0.4 987,303 + PS417_04445 0.30 -0.6 987,303 + PS417_04445 0.30 -0.8 987,303 + PS417_04445 0.30 -0.5 987,304 - PS417_04445 0.30 -0.1 987,304 - PS417_04445 0.30 -1.3 987,304 - PS417_04445 0.30 -0.7 987,304 - PS417_04445 0.30 -0.9 987,597 + +0.2 987,632 + +0.6 987,679 - -1.5 987,818 - PS417_04450 0.31 +0.1 987,818 - PS417_04450 0.31 -0.8 987,818 - PS417_04450 0.31 +0.8 987,989 + PS417_04450 0.67 -0.5 987,990 - PS417_04450 0.67 +0.3 987,998 - PS417_04450 0.69 -0.6 988,038 - PS417_04450 0.77 -0.0 988,076 + PS417_04450 0.85 -0.5 988,076 + PS417_04450 0.85 -0.1 988,076 + PS417_04450 0.85 -0.4 988,076 + PS417_04450 0.85 +0.4 988,077 - PS417_04450 0.85 +0.7 988,077 - PS417_04450 0.85 +0.4 988,081 - PS417_04450 0.86 -0.5 988,095 - PS417_04450 0.88 -0.2 988,108 + -1.1 988,108 + -1.0 988,109 - +0.4 988,109 - -0.8 988,122 + -0.6 988,122 + -1.2 988,166 - -0.1 988,166 - +0.1 988,203 + -0.3 988,211 - -0.6 988,216 + -0.3 988,216 + -0.2 988,299 + -1.4 988,318 - +0.8 988,318 - -0.1 988,585 - PS417_04455 0.84 -0.7
Or see this region's nucleotide sequence