Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27225 and PS417_27230 are separated by 10 nucleotides PS417_27230 and PS417_27235 are separated by 69 nucleotides PS417_27235 and PS417_27240 are separated by 188 nucleotides
PS417_27225: PS417_27225 - protease, at 5,878,048 to 5,878,968
_27225
PS417_27230: PS417_27230 - membrane protein implicated in regulation of membrane protease activity, at 5,878,979 to 5,879,425
_27230
PS417_27235: PS417_27235 - ribonucleotide reductase, at 5,879,495 to 5,879,809
_27235
PS417_27240: PS417_27240 - hypothetical protein, at 5,879,998 to 5,880,663
_27240
Position (kb) 5878
5879
5880 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5877.998 kb on + strand at 5877.998 kb on + strand at 5877.999 kb on - strand at 5878.036 kb on + strand at 5878.065 kb on - strand at 5878.065 kb on - strand at 5878.101 kb on - strand at 5878.101 kb on - strand at 5878.101 kb on - strand at 5878.101 kb on - strand at 5878.481 kb on + strand, within PS417_27225 at 5878.481 kb on + strand, within PS417_27225 at 5878.482 kb on - strand, within PS417_27225 at 5878.811 kb on - strand, within PS417_27225 at 5878.828 kb on + strand, within PS417_27225 at 5878.828 kb on + strand, within PS417_27225 at 5879.030 kb on - strand, within PS417_27230 at 5879.053 kb on - strand, within PS417_27230 at 5879.155 kb on - strand, within PS417_27230 at 5879.189 kb on + strand, within PS417_27230 at 5879.189 kb on + strand, within PS417_27230 at 5879.316 kb on + strand, within PS417_27230 at 5879.453 kb on + strand at 5879.453 kb on + strand at 5879.453 kb on + strand at 5879.453 kb on + strand at 5879.453 kb on + strand at 5879.454 kb on - strand at 5879.454 kb on - strand at 5879.454 kb on - strand at 5879.461 kb on + strand at 5879.466 kb on + strand at 5879.467 kb on - strand at 5879.467 kb on - strand at 5879.472 kb on + strand at 5879.507 kb on + strand at 5879.612 kb on + strand, within PS417_27235 at 5879.613 kb on - strand, within PS417_27235 at 5879.807 kb on + strand at 5879.808 kb on - strand at 5879.889 kb on + strand at 5879.890 kb on - strand at 5879.890 kb on - strand at 5879.893 kb on + strand at 5879.893 kb on + strand at 5879.893 kb on + strand at 5879.893 kb on + strand at 5879.893 kb on + strand at 5879.893 kb on + strand at 5879.894 kb on - strand at 5879.894 kb on - strand at 5879.894 kb on - strand at 5879.894 kb on - strand at 5879.894 kb on - strand at 5879.919 kb on + strand at 5879.963 kb on - strand at 5879.963 kb on - strand at 5880.014 kb on - strand at 5880.198 kb on + strand, within PS417_27240 at 5880.198 kb on + strand, within PS417_27240 at 5880.198 kb on + strand, within PS417_27240 at 5880.199 kb on - strand, within PS417_27240 at 5880.199 kb on - strand at 5880.199 kb on - strand, within PS417_27240 at 5880.232 kb on + strand, within PS417_27240 at 5880.279 kb on + strand, within PS417_27240 at 5880.335 kb on - strand, within PS417_27240 at 5880.335 kb on - strand, within PS417_27240 at 5880.336 kb on + strand, within PS417_27240 at 5880.337 kb on - strand, within PS417_27240 at 5880.337 kb on - strand, within PS417_27240 at 5880.343 kb on - strand, within PS417_27240 at 5880.370 kb on + strand, within PS417_27240 at 5880.371 kb on - strand, within PS417_27240
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 5,877,998 + -1.0 5,877,998 + -0.2 5,877,999 - -1.0 5,878,036 + +0.0 5,878,065 - -0.7 5,878,065 - -0.4 5,878,101 - -0.1 5,878,101 - +0.0 5,878,101 - +1.2 5,878,101 - -0.6 5,878,481 + PS417_27225 0.47 -0.0 5,878,481 + PS417_27225 0.47 -0.0 5,878,482 - PS417_27225 0.47 -0.2 5,878,811 - PS417_27225 0.83 -0.1 5,878,828 + PS417_27225 0.85 +0.6 5,878,828 + PS417_27225 0.85 -0.2 5,879,030 - PS417_27230 0.11 -1.9 5,879,053 - PS417_27230 0.17 -0.7 5,879,155 - PS417_27230 0.39 -0.4 5,879,189 + PS417_27230 0.47 -0.6 5,879,189 + PS417_27230 0.47 -0.5 5,879,316 + PS417_27230 0.75 -1.6 5,879,453 + -0.9 5,879,453 + -0.3 5,879,453 + +0.9 5,879,453 + -0.2 5,879,453 + -0.7 5,879,454 - +0.8 5,879,454 - +0.4 5,879,454 - +0.2 5,879,461 + -0.4 5,879,466 + +1.8 5,879,467 - -0.4 5,879,467 - -0.4 5,879,472 + +1.8 5,879,507 + -0.5 5,879,612 + PS417_27235 0.37 -0.3 5,879,613 - PS417_27235 0.37 +0.8 5,879,807 + -0.2 5,879,808 - +1.0 5,879,889 + -0.4 5,879,890 - -1.0 5,879,890 - +0.4 5,879,893 + -1.3 5,879,893 + +0.5 5,879,893 + -1.0 5,879,893 + +0.1 5,879,893 + -0.6 5,879,893 + +0.1 5,879,894 - -0.4 5,879,894 - +0.1 5,879,894 - +0.4 5,879,894 - -0.4 5,879,894 - -0.7 5,879,919 + +0.3 5,879,963 - +0.7 5,879,963 - -0.1 5,880,014 - -1.0 5,880,198 + PS417_27240 0.30 -1.4 5,880,198 + PS417_27240 0.30 -0.1 5,880,198 + PS417_27240 0.30 -0.2 5,880,199 - PS417_27240 0.30 -0.8 5,880,199 - -0.5 5,880,199 - PS417_27240 0.30 -0.5 5,880,232 + PS417_27240 0.35 -0.1 5,880,279 + PS417_27240 0.42 -0.6 5,880,335 - PS417_27240 0.51 -0.2 5,880,335 - PS417_27240 0.51 -0.1 5,880,336 + PS417_27240 0.51 -0.3 5,880,337 - PS417_27240 0.51 -0.5 5,880,337 - PS417_27240 0.51 +1.0 5,880,343 - PS417_27240 0.52 +0.1 5,880,370 + PS417_27240 0.56 -1.3 5,880,371 - PS417_27240 0.56 +0.1
Or see this region's nucleotide sequence