Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02155 and PS417_02160 are separated by 278 nucleotides PS417_02160 and PS417_02165 overlap by 4 nucleotides PS417_02165 and PS417_02170 overlap by 4 nucleotides
PS417_02155: PS417_02155 - chemotaxis protein, at 482,596 to 484,221
_02155
PS417_02160: PS417_02160 - hypothetical protein, at 484,500 to 484,730
_02160
PS417_02165: PS417_02165 - ZapA, at 484,727 to 485,020
_02165
PS417_02170: PS417_02170 - acyl-CoA dehydrogenase, at 485,017 to 486,819
_02170
Position (kb) 484
485 Strain fitness (log2 ratio) -2
-1
0
1 at 483.583 kb on - strand, within PS417_02155 at 483.848 kb on + strand, within PS417_02155 at 483.869 kb on + strand, within PS417_02155 at 483.878 kb on + strand, within PS417_02155 at 484.201 kb on - strand at 484.206 kb on + strand at 484.209 kb on + strand at 484.210 kb on - strand at 484.303 kb on - strand at 484.381 kb on + strand at 484.683 kb on - strand, within PS417_02160 at 484.859 kb on + strand, within PS417_02165 at 484.859 kb on + strand, within PS417_02165 at 484.884 kb on + strand, within PS417_02165 at 484.885 kb on - strand, within PS417_02165 at 485.096 kb on - strand at 485.226 kb on + strand, within PS417_02170 at 485.525 kb on + strand, within PS417_02170 at 485.526 kb on - strand, within PS417_02170 at 485.528 kb on + strand, within PS417_02170 at 485.529 kb on - strand, within PS417_02170 at 485.529 kb on - strand, within PS417_02170 at 485.529 kb on - strand, within PS417_02170 at 485.556 kb on - strand, within PS417_02170 at 485.647 kb on + strand, within PS417_02170
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 483,583 - PS417_02155 0.61 -1.0 483,848 + PS417_02155 0.77 -0.1 483,869 + PS417_02155 0.78 +1.0 483,878 + PS417_02155 0.79 -0.1 484,201 - +0.8 484,206 + -0.4 484,209 + +0.5 484,210 - -0.0 484,303 - +0.6 484,381 + +1.4 484,683 - PS417_02160 0.79 -0.7 484,859 + PS417_02165 0.45 -0.1 484,859 + PS417_02165 0.45 +0.0 484,884 + PS417_02165 0.53 +1.0 484,885 - PS417_02165 0.54 -0.8 485,096 - -0.0 485,226 + PS417_02170 0.12 +1.1 485,525 + PS417_02170 0.28 +0.2 485,526 - PS417_02170 0.28 -0.1 485,528 + PS417_02170 0.28 +0.2 485,529 - PS417_02170 0.28 -0.0 485,529 - PS417_02170 0.28 +0.0 485,529 - PS417_02170 0.28 -1.8 485,556 - PS417_02170 0.30 +0.3 485,647 + PS417_02170 0.35 +0.8
Or see this region's nucleotide sequence