Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19210 and PS417_19215 are separated by 91 nucleotides PS417_19215 and PS417_19220 are separated by 102 nucleotides
PS417_19210: PS417_19210 - acetyl-CoA acetyltransferase, at 4,162,653 to 4,163,837
_19210
PS417_19215: PS417_19215 - polyphosphate kinase, at 4,163,929 to 4,165,455
_19215
PS417_19220: PS417_19220 - hypothetical protein, at 4,165,558 to 4,170,402
_19220
Position (kb) 4163
4164
4165
4166 Strain fitness (log2 ratio) -1
0
1 at 4163.248 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.249 kb on - strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.405 kb on - strand, within PS417_19210 at 4163.644 kb on + strand, within PS417_19210 at 4163.644 kb on + strand, within PS417_19210 at 4163.826 kb on + strand at 4163.827 kb on - strand at 4163.827 kb on - strand at 4163.842 kb on + strand at 4163.881 kb on - strand at 4163.931 kb on - strand at 4164.117 kb on - strand, within PS417_19215 at 4164.425 kb on + strand, within PS417_19215 at 4164.477 kb on - strand, within PS417_19215 at 4164.477 kb on - strand, within PS417_19215 at 4164.622 kb on + strand, within PS417_19215 at 4164.623 kb on - strand, within PS417_19215 at 4164.842 kb on + strand, within PS417_19215 at 4165.409 kb on + strand at 4165.409 kb on + strand at 4165.410 kb on - strand at 4165.486 kb on + strand at 4165.582 kb on - strand at 4165.637 kb on - strand at 4165.682 kb on + strand at 4165.682 kb on + strand at 4165.682 kb on + strand at 4165.783 kb on - strand at 4165.783 kb on - strand at 4165.812 kb on + strand at 4166.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 4,163,248 + PS417_19210 0.50 -1.6 4,163,248 + PS417_19210 0.50 -1.1 4,163,248 + PS417_19210 0.50 +0.3 4,163,249 - PS417_19210 0.50 -0.6 4,163,332 + PS417_19210 0.57 +0.0 4,163,332 + PS417_19210 0.57 -0.6 4,163,332 + PS417_19210 0.57 -0.4 4,163,332 + PS417_19210 0.57 +0.0 4,163,333 - PS417_19210 0.57 -0.1 4,163,333 - PS417_19210 0.57 +0.8 4,163,333 - PS417_19210 0.57 -0.5 4,163,333 - PS417_19210 0.57 -1.6 4,163,333 - PS417_19210 0.57 -0.3 4,163,405 - PS417_19210 0.63 +0.8 4,163,644 + PS417_19210 0.84 +0.4 4,163,644 + PS417_19210 0.84 +1.0 4,163,826 + -0.7 4,163,827 - -0.8 4,163,827 - -0.2 4,163,842 + -0.1 4,163,881 - -0.4 4,163,931 - -0.3 4,164,117 - PS417_19215 0.12 -0.8 4,164,425 + PS417_19215 0.32 +1.4 4,164,477 - PS417_19215 0.36 -0.2 4,164,477 - PS417_19215 0.36 -1.1 4,164,622 + PS417_19215 0.45 -1.0 4,164,623 - PS417_19215 0.45 -0.4 4,164,842 + PS417_19215 0.60 -0.8 4,165,409 + +0.8 4,165,409 + +0.7 4,165,410 - -0.6 4,165,486 + -0.8 4,165,582 - -0.1 4,165,637 - +0.3 4,165,682 + -0.5 4,165,682 + +0.8 4,165,682 + +0.2 4,165,783 - +0.1 4,165,783 - +0.4 4,165,812 + -0.7 4,166,013 - -0.9
Or see this region's nucleotide sequence