Strain Fitness in Pseudomonas simiae WCS417 around PS417_01270

Experiment: R2A with Fusaric 120 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_01265 and PS417_01270 overlap by 4 nucleotidesPS417_01270 and PS417_01275 are separated by 97 nucleotides PS417_01265: PS417_01265 - CbbBc protein, at 274,601 to 276,949 _01265 PS417_01270: PS417_01270 - iron ABC transporter substrate-binding protein, at 276,946 to 277,785 _01270 PS417_01275: PS417_01275 - LysR family transcriptional regulator, at 277,883 to 278,770 _01275 Position (kb) 276 277 278Strain fitness (log2 ratio) -1 0 1 2 3at 275.946 kb on + strand, within PS417_01265at 275.947 kb on - strand, within PS417_01265at 276.433 kb on - strand, within PS417_01265at 276.433 kb on - strand, within PS417_01265at 276.438 kb on + strand, within PS417_01265at 276.439 kb on - strand, within PS417_01265at 276.472 kb on - strand, within PS417_01265at 276.576 kb on + strand, within PS417_01265at 276.606 kb on + strand, within PS417_01265at 276.897 kb on + strandat 276.897 kb on + strandat 277.283 kb on + strand, within PS417_01270at 277.367 kb on - strand, within PS417_01270at 277.709 kb on + strandat 277.710 kb on - strandat 277.794 kb on - strandat 278.266 kb on - strand, within PS417_01275at 278.318 kb on - strandat 278.335 kb on - strand, within PS417_01275at 278.448 kb on - strand, within PS417_01275at 278.448 kb on - strand, within PS417_01275at 278.548 kb on - strand, within PS417_01275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
remove
275,946 + PS417_01265 0.57 +0.1
275,947 - PS417_01265 0.57 +0.2
276,433 - PS417_01265 0.78 -1.3
276,433 - PS417_01265 0.78 +0.6
276,438 + PS417_01265 0.78 +0.2
276,439 - PS417_01265 0.78 -0.7
276,472 - PS417_01265 0.80 -0.1
276,576 + PS417_01265 0.84 +0.1
276,606 + PS417_01265 0.85 +0.0
276,897 + +0.8
276,897 + -0.4
277,283 + PS417_01270 0.40 -0.5
277,367 - PS417_01270 0.50 -0.8
277,709 + +0.3
277,710 - +0.4
277,794 - +0.8
278,266 - PS417_01275 0.43 -0.2
278,318 - +3.6
278,335 - PS417_01275 0.51 -0.6
278,448 - PS417_01275 0.64 -0.9
278,448 - PS417_01275 0.64 -0.2
278,548 - PS417_01275 0.75 -0.8

Or see this region's nucleotide sequence