Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08450 and PS417_08455 are separated by 70 nucleotides PS417_08455 and PS417_08460 are separated by 103 nucleotides PS417_08460 and PS417_08465 are separated by 121 nucleotides PS417_08465 and PS417_08470 are separated by 5 nucleotides
PS417_08450: PS417_08450 - 5'-nucleotidase, at 1,849,669 to 1,850,574
_08450
PS417_08455: PS417_08455 - universal stress protein UspA, at 1,850,645 to 1,851,145
_08455
PS417_08460: PS417_08460 - CysB family transcriptional regulator, at 1,851,249 to 1,852,223
_08460
PS417_08465: PS417_08465 - elongation factor GreAB, at 1,852,345 to 1,852,827
_08465
PS417_08470: PS417_08470 - hypothetical protein, at 1,852,833 to 1,853,201
_08470
Position (kb) 1851
1852
1853 Strain fitness (log2 ratio) -1
0
1
2
3 at 1850.294 kb on + strand, within PS417_08450 at 1850.573 kb on - strand at 1850.602 kb on - strand at 1850.644 kb on + strand at 1850.644 kb on + strand at 1850.644 kb on + strand at 1850.644 kb on + strand at 1850.645 kb on - strand at 1850.645 kb on - strand at 1850.663 kb on + strand at 1850.684 kb on + strand at 1850.693 kb on + strand at 1850.693 kb on + strand at 1850.693 kb on + strand at 1850.744 kb on + strand, within PS417_08455 at 1850.744 kb on + strand at 1850.745 kb on - strand, within PS417_08455 at 1850.745 kb on - strand, within PS417_08455 at 1850.745 kb on - strand, within PS417_08455 at 1850.801 kb on + strand, within PS417_08455 at 1850.801 kb on + strand, within PS417_08455 at 1850.802 kb on - strand, within PS417_08455 at 1851.015 kb on + strand, within PS417_08455 at 1851.016 kb on - strand, within PS417_08455 at 1851.016 kb on - strand, within PS417_08455 at 1851.019 kb on + strand, within PS417_08455 at 1851.020 kb on - strand, within PS417_08455 at 1851.026 kb on - strand, within PS417_08455 at 1851.088 kb on + strand, within PS417_08455 at 1851.088 kb on + strand, within PS417_08455 at 1851.195 kb on + strand at 1851.201 kb on + strand at 1851.248 kb on + strand at 1851.327 kb on + strand at 1851.328 kb on - strand at 1851.328 kb on - strand at 1851.841 kb on + strand at 1851.946 kb on - strand at 1851.946 kb on - strand, within PS417_08460 at 1852.221 kb on + strand at 1852.245 kb on + strand at 1852.246 kb on - strand at 1852.253 kb on - strand at 1852.339 kb on + strand at 1852.351 kb on - strand at 1852.360 kb on - strand at 1852.365 kb on + strand at 1852.366 kb on - strand at 1852.592 kb on + strand, within PS417_08465 at 1852.593 kb on - strand, within PS417_08465 at 1852.593 kb on - strand, within PS417_08465 at 1852.701 kb on - strand, within PS417_08465 at 1852.701 kb on - strand, within PS417_08465 at 1852.701 kb on - strand, within PS417_08465 at 1852.821 kb on + strand at 1852.822 kb on - strand at 1852.822 kb on - strand at 1852.929 kb on - strand, within PS417_08470 at 1852.993 kb on + strand, within PS417_08470 at 1853.095 kb on + strand, within PS417_08470 at 1853.096 kb on - strand, within PS417_08470
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 1,850,294 + PS417_08450 0.69 -0.1 1,850,573 - -1.2 1,850,602 - -0.3 1,850,644 + -0.1 1,850,644 + +0.6 1,850,644 + +0.3 1,850,644 + +0.4 1,850,645 - +0.1 1,850,645 - +0.5 1,850,663 + +0.5 1,850,684 + +0.3 1,850,693 + +0.1 1,850,693 + +0.0 1,850,693 + +1.4 1,850,744 + PS417_08455 0.20 +0.4 1,850,744 + +3.3 1,850,745 - PS417_08455 0.20 +0.5 1,850,745 - PS417_08455 0.20 -0.7 1,850,745 - PS417_08455 0.20 -0.2 1,850,801 + PS417_08455 0.31 -1.3 1,850,801 + PS417_08455 0.31 +0.1 1,850,802 - PS417_08455 0.31 +0.7 1,851,015 + PS417_08455 0.74 +0.2 1,851,016 - PS417_08455 0.74 +0.2 1,851,016 - PS417_08455 0.74 +0.5 1,851,019 + PS417_08455 0.75 +0.3 1,851,020 - PS417_08455 0.75 +0.7 1,851,026 - PS417_08455 0.76 +0.2 1,851,088 + PS417_08455 0.88 +0.0 1,851,088 + PS417_08455 0.88 +1.1 1,851,195 + +0.4 1,851,201 + +0.6 1,851,248 + +0.8 1,851,327 + +0.9 1,851,328 - +1.3 1,851,328 - +1.7 1,851,841 + -1.1 1,851,946 - -1.4 1,851,946 - PS417_08460 0.71 +0.4 1,852,221 + -0.1 1,852,245 + +0.0 1,852,246 - -0.6 1,852,253 - -0.7 1,852,339 + +0.4 1,852,351 - +0.6 1,852,360 - -1.3 1,852,365 + +0.1 1,852,366 - -0.1 1,852,592 + PS417_08465 0.51 +1.0 1,852,593 - PS417_08465 0.51 +1.4 1,852,593 - PS417_08465 0.51 +0.0 1,852,701 - PS417_08465 0.74 +0.3 1,852,701 - PS417_08465 0.74 +1.6 1,852,701 - PS417_08465 0.74 +0.3 1,852,821 + +0.0 1,852,822 - -1.7 1,852,822 - -0.1 1,852,929 - PS417_08470 0.26 -0.0 1,852,993 + PS417_08470 0.43 +0.2 1,853,095 + PS417_08470 0.71 +0.3 1,853,096 - PS417_08470 0.71 +0.6
Or see this region's nucleotide sequence