Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00750 and PS417_00755 are separated by 2 nucleotides PS417_00755 and PS417_00760 are separated by 367 nucleotides
PS417_00750: PS417_00750 - N-glycosyltransferase, at 159,282 to 160,622
_00750
PS417_00755: PS417_00755 - biofilm PGA synthesis protein PgaD, at 160,625 to 161,107
_00755
PS417_00760: PS417_00760 - ShlB family hemolysin secretion/activation protein, at 161,475 to 163,196
_00760
Position (kb) 160
161
162 Strain fitness (log2 ratio) -1
0
1
2 at 159.753 kb on + strand, within PS417_00750 at 159.754 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.996 kb on - strand, within PS417_00750 at 160.095 kb on + strand, within PS417_00750 at 160.096 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.309 kb on - strand, within PS417_00750 at 160.651 kb on + strand at 160.651 kb on + strand at 160.651 kb on + strand at 160.652 kb on - strand at 160.652 kb on - strand at 160.652 kb on - strand at 160.805 kb on + strand, within PS417_00755 at 161.106 kb on - strand at 161.157 kb on + strand at 161.221 kb on + strand at 161.222 kb on - strand at 161.261 kb on - strand at 161.344 kb on - strand at 161.344 kb on - strand at 161.434 kb on + strand at 161.779 kb on - strand, within PS417_00760 at 161.779 kb on - strand, within PS417_00760 at 161.874 kb on + strand, within PS417_00760 at 161.874 kb on + strand, within PS417_00760
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 159,753 + PS417_00750 0.35 -0.4 159,754 - PS417_00750 0.35 +1.6 159,805 - PS417_00750 0.39 +1.8 159,805 - PS417_00750 0.39 -0.1 159,805 - PS417_00750 0.39 -0.7 159,805 - PS417_00750 0.39 -0.1 159,996 - PS417_00750 0.53 -0.5 160,095 + PS417_00750 0.61 -1.0 160,096 - PS417_00750 0.61 +0.0 160,284 - PS417_00750 0.75 -0.4 160,284 - PS417_00750 0.75 +1.5 160,284 - PS417_00750 0.75 -0.8 160,309 - PS417_00750 0.77 -1.2 160,651 + -0.7 160,651 + -0.0 160,651 + +0.2 160,652 - -0.0 160,652 - -0.4 160,652 - -0.1 160,805 + PS417_00755 0.37 -0.7 161,106 - +0.8 161,157 + -0.3 161,221 + +1.8 161,222 - -0.2 161,261 - +1.8 161,344 - +1.3 161,344 - -0.6 161,434 + -1.0 161,779 - PS417_00760 0.18 -0.8 161,779 - PS417_00760 0.18 +0.2 161,874 + PS417_00760 0.23 +0.1 161,874 + PS417_00760 0.23 +2.4
Or see this region's nucleotide sequence