Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00470 and PS417_00475 are separated by 98 nucleotides PS417_00475 and PS417_00480 are separated by 103 nucleotides PS417_00480 and PS417_00485 overlap by 4 nucleotides
PS417_00470: PS417_00470 - glutamate:protein symporter, at 92,676 to 94,007
_00470
PS417_00475: PS417_00475 - membrane protein, at 94,106 to 95,335
_00475
PS417_00480: PS417_00480 - hypothetical protein, at 95,439 to 96,050
_00480
PS417_00485: PS417_00485 - ABC transporter permease, at 96,047 to 96,985
_00485
Position (kb) 94
95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 93.122 kb on + strand, within PS417_00470 at 93.289 kb on - strand, within PS417_00470 at 93.495 kb on + strand, within PS417_00470 at 93.628 kb on - strand, within PS417_00470 at 93.628 kb on - strand, within PS417_00470 at 93.663 kb on + strand, within PS417_00470 at 93.663 kb on + strand, within PS417_00470 at 93.664 kb on - strand, within PS417_00470 at 93.664 kb on - strand, within PS417_00470 at 93.731 kb on + strand, within PS417_00470 at 93.732 kb on - strand, within PS417_00470 at 93.915 kb on + strand at 93.915 kb on + strand at 93.915 kb on + strand at 93.915 kb on + strand at 93.915 kb on + strand at 93.916 kb on - strand at 93.916 kb on - strand at 93.916 kb on - strand at 94.072 kb on + strand at 94.725 kb on - strand, within PS417_00475 at 94.725 kb on - strand, within PS417_00475 at 94.886 kb on + strand, within PS417_00475 at 94.909 kb on + strand, within PS417_00475 at 95.207 kb on + strand, within PS417_00475 at 95.207 kb on + strand, within PS417_00475 at 95.207 kb on + strand, within PS417_00475 at 95.208 kb on - strand, within PS417_00475 at 95.208 kb on - strand, within PS417_00475 at 95.208 kb on - strand, within PS417_00475 at 95.223 kb on - strand at 95.318 kb on + strand at 95.319 kb on - strand at 95.374 kb on + strand at 95.375 kb on - strand at 95.375 kb on - strand at 95.698 kb on + strand, within PS417_00480 at 95.699 kb on - strand, within PS417_00480 at 95.717 kb on + strand, within PS417_00480 at 95.768 kb on + strand, within PS417_00480 at 95.821 kb on + strand, within PS417_00480 at 96.018 kb on + strand at 96.019 kb on - strand at 96.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 93,122 + PS417_00470 0.33 +1.2 93,289 - PS417_00470 0.46 +0.6 93,495 + PS417_00470 0.61 +0.1 93,628 - PS417_00470 0.71 -1.4 93,628 - PS417_00470 0.71 -1.6 93,663 + PS417_00470 0.74 +2.5 93,663 + PS417_00470 0.74 +1.6 93,664 - PS417_00470 0.74 +0.6 93,664 - PS417_00470 0.74 -0.1 93,731 + PS417_00470 0.79 -0.8 93,732 - PS417_00470 0.79 +0.2 93,915 + +0.6 93,915 + +0.3 93,915 + +0.2 93,915 + +1.3 93,915 + +0.6 93,916 - +0.6 93,916 - +0.1 93,916 - +0.2 94,072 + -0.0 94,725 - PS417_00475 0.50 -0.6 94,725 - PS417_00475 0.50 -1.8 94,886 + PS417_00475 0.63 -2.8 94,909 + PS417_00475 0.65 -1.8 95,207 + PS417_00475 0.90 +0.1 95,207 + PS417_00475 0.90 -2.2 95,207 + PS417_00475 0.90 -0.6 95,208 - PS417_00475 0.90 -0.8 95,208 - PS417_00475 0.90 +0.1 95,208 - PS417_00475 0.90 -0.1 95,223 - -1.1 95,318 + -1.4 95,319 - +0.1 95,374 + -0.4 95,375 - -0.2 95,375 - +0.1 95,698 + PS417_00480 0.42 -0.2 95,699 - PS417_00480 0.42 -0.2 95,717 + PS417_00480 0.45 -0.4 95,768 + PS417_00480 0.54 -0.6 95,821 + PS417_00480 0.62 -0.9 96,018 + +1.2 96,019 - +0.1 96,030 + -0.0
Or see this region's nucleotide sequence