Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03355 and PS417_03360 overlap by 77 nucleotides PS417_03360 and PS417_03365 overlap by 4 nucleotides
PS417_03355: PS417_03355 - cation transporter, at 769,678 to 772,815
_03355
PS417_03360: PS417_03360 - histidine kinase, at 772,739 to 774,175
_03360
PS417_03365: PS417_03365 - transcriptional regulator, at 774,172 to 774,846
_03365
Position (kb) 772
773
774
775 Strain fitness (log2 ratio) -2
-1
0
1
2 at 772.404 kb on - strand, within PS417_03355 at 772.494 kb on + strand, within PS417_03355 at 772.740 kb on + strand at 772.741 kb on - strand at 772.741 kb on - strand at 772.741 kb on - strand at 772.774 kb on + strand at 772.775 kb on - strand at 773.028 kb on + strand, within PS417_03360 at 773.346 kb on + strand, within PS417_03360 at 773.346 kb on + strand, within PS417_03360 at 773.347 kb on - strand, within PS417_03360 at 773.689 kb on - strand, within PS417_03360 at 773.742 kb on - strand, within PS417_03360 at 773.745 kb on + strand, within PS417_03360 at 773.745 kb on + strand, within PS417_03360 at 773.746 kb on - strand, within PS417_03360 at 773.820 kb on + strand, within PS417_03360 at 773.820 kb on + strand, within PS417_03360 at 773.928 kb on + strand, within PS417_03360 at 773.932 kb on + strand, within PS417_03360 at 773.932 kb on + strand, within PS417_03360 at 773.932 kb on + strand, within PS417_03360 at 773.932 kb on + strand, within PS417_03360 at 774.087 kb on + strand at 774.163 kb on + strand at 774.557 kb on + strand, within PS417_03365 at 774.557 kb on + strand, within PS417_03365 at 774.557 kb on + strand, within PS417_03365 at 774.558 kb on - strand, within PS417_03365 at 774.767 kb on - strand, within PS417_03365 at 774.767 kb on - strand, within PS417_03365 at 774.774 kb on - strand, within PS417_03365 at 774.803 kb on + strand at 774.840 kb on + strand at 774.854 kb on + strand at 774.855 kb on - strand at 774.855 kb on - strand at 774.909 kb on - strand at 775.043 kb on + strand at 775.122 kb on + strand at 775.123 kb on - strand at 775.157 kb on + strand at 775.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 772,404 - PS417_03355 0.87 -0.9 772,494 + PS417_03355 0.90 -1.4 772,740 + -0.4 772,741 - -2.1 772,741 - -0.4 772,741 - +0.3 772,774 + -1.7 772,775 - -0.5 773,028 + PS417_03360 0.20 -0.3 773,346 + PS417_03360 0.42 +1.1 773,346 + PS417_03360 0.42 +0.4 773,347 - PS417_03360 0.42 +0.3 773,689 - PS417_03360 0.66 -0.5 773,742 - PS417_03360 0.70 +0.0 773,745 + PS417_03360 0.70 +0.0 773,745 + PS417_03360 0.70 +0.8 773,746 - PS417_03360 0.70 -0.4 773,820 + PS417_03360 0.75 +0.2 773,820 + PS417_03360 0.75 +1.6 773,928 + PS417_03360 0.83 +0.5 773,932 + PS417_03360 0.83 +1.6 773,932 + PS417_03360 0.83 +2.2 773,932 + PS417_03360 0.83 +1.4 773,932 + PS417_03360 0.83 +2.6 774,087 + -0.2 774,163 + -0.2 774,557 + PS417_03365 0.57 +0.2 774,557 + PS417_03365 0.57 +0.5 774,557 + PS417_03365 0.57 -0.2 774,558 - PS417_03365 0.57 +0.6 774,767 - PS417_03365 0.88 -0.3 774,767 - PS417_03365 0.88 +0.1 774,774 - PS417_03365 0.89 -1.3 774,803 + -0.2 774,840 + +0.5 774,854 + -0.1 774,855 - -1.7 774,855 - +0.3 774,909 - -0.3 775,043 + -0.3 775,122 + +0.4 775,123 - +0.9 775,157 + -0.2 775,158 - +0.1
Or see this region's nucleotide sequence