Strain Fitness in Pseudomonas simiae WCS417 around PS417_17550
Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Fusaric 120 ug/mL |
---|---|---|---|---|---|
remove | |||||
3,831,561 | + | PS417_17545 | 0.26 | -0.9 | |
3,831,643 | - | PS417_17545 | 0.32 | -0.1 | |
3,831,754 | - | PS417_17545 | 0.41 | -0.1 | |
3,831,812 | - | PS417_17545 | 0.46 | -2.4 | |
3,831,934 | + | PS417_17545 | 0.56 | -0.6 | |
3,832,206 | + | PS417_17545 | 0.78 | -0.6 | |
3,832,780 | + | PS417_17550 | 0.28 | +0.1 | |
3,832,780 | + | PS417_17550 | 0.28 | -0.3 | |
3,832,895 | - | PS417_17550 | 0.39 | -0.9 | |
3,833,137 | + | +0.9 | |||
3,833,138 | - | PS417_17550 | 0.62 | -1.6 | |
3,833,215 | + | PS417_17550 | 0.69 | -0.7 | |
3,833,215 | + | -1.8 | |||
3,833,215 | + | PS417_17550 | 0.69 | -2.6 | |
3,833,483 | - | -0.4 | |||
3,834,194 | + | PS417_17555 | 0.52 | +1.0 |
Or see this region's nucleotide sequence