Strain Fitness in Pseudomonas simiae WCS417 around PS417_09400

Experiment: R2A with Fusaric 120 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09385 and PS417_09390 are separated by 19 nucleotidesPS417_09390 and PS417_09395 overlap by 4 nucleotidesPS417_09395 and PS417_09400 overlap by 4 nucleotidesPS417_09400 and PS417_09405 overlap by 4 nucleotides PS417_09385: PS417_09385 - ABC transporter substrate-binding protein, at 2,035,142 to 2,036,062 _09385 PS417_09390: PS417_09390 - hypothetical protein, at 2,036,082 to 2,036,642 _09390 PS417_09395: PS417_09395 - hypothetical protein, at 2,036,639 to 2,036,968 _09395 PS417_09400: PS417_09400 - thiamine pyrophosphate-binding protein, at 2,036,965 to 2,037,501 _09400 PS417_09405: PS417_09405 - peptidase, at 2,037,498 to 2,038,700 _09405 Position (kb) 2036 2037 2038Strain fitness (log2 ratio) -2 -1 0 1at 2036.591 kb on - strandat 2036.909 kb on - strand, within PS417_09395at 2038.088 kb on + strand, within PS417_09405

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
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2,036,591 - -1.8
2,036,909 - PS417_09395 0.82 +0.7
2,038,088 + PS417_09405 0.49 -0.3

Or see this region's nucleotide sequence