Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00655 and PS417_00660 are separated by 15 nucleotides PS417_00660 and PS417_00665 overlap by 4 nucleotides
PS417_00655: PS417_00655 - DSBA oxidoreductase, at 133,695 to 135,230
_00655
PS417_00660: PS417_00660 - DSBA oxidoreductase, at 135,246 to 136,304
_00660
PS417_00665: PS417_00665 - RND transporter, at 136,301 to 137,746
_00665
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2 at 134.847 kb on + strand, within PS417_00655 at 134.847 kb on + strand, within PS417_00655 at 134.999 kb on + strand, within PS417_00655 at 135.141 kb on + strand at 135.142 kb on - strand at 135.144 kb on + strand at 135.144 kb on + strand at 135.145 kb on - strand at 135.309 kb on + strand at 135.310 kb on - strand at 135.310 kb on - strand at 135.518 kb on + strand, within PS417_00660 at 135.870 kb on + strand, within PS417_00660 at 135.871 kb on - strand, within PS417_00660 at 135.933 kb on + strand, within PS417_00660 at 135.933 kb on + strand, within PS417_00660 at 135.984 kb on + strand, within PS417_00660 at 135.985 kb on - strand, within PS417_00660 at 136.023 kb on - strand, within PS417_00660 at 136.292 kb on - strand at 136.502 kb on - strand, within PS417_00665 at 136.502 kb on - strand, within PS417_00665 at 136.625 kb on + strand, within PS417_00665 at 136.626 kb on - strand, within PS417_00665 at 136.848 kb on - strand, within PS417_00665 at 136.867 kb on - strand, within PS417_00665 at 136.867 kb on - strand, within PS417_00665 at 137.000 kb on - strand, within PS417_00665
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 134,847 + PS417_00655 0.75 +0.0 134,847 + PS417_00655 0.75 -0.0 134,999 + PS417_00655 0.85 +1.1 135,141 + -0.7 135,142 - +0.6 135,144 + -0.3 135,144 + +0.5 135,145 - +0.2 135,309 + +0.5 135,310 - +0.1 135,310 - +0.3 135,518 + PS417_00660 0.26 -0.7 135,870 + PS417_00660 0.59 -0.8 135,871 - PS417_00660 0.59 -0.9 135,933 + PS417_00660 0.65 -1.4 135,933 + PS417_00660 0.65 +0.9 135,984 + PS417_00660 0.70 +0.1 135,985 - PS417_00660 0.70 -0.3 136,023 - PS417_00660 0.73 -0.4 136,292 - -0.2 136,502 - PS417_00665 0.14 -0.2 136,502 - PS417_00665 0.14 +0.2 136,625 + PS417_00665 0.22 +0.2 136,626 - PS417_00665 0.22 -0.4 136,848 - PS417_00665 0.38 -0.2 136,867 - PS417_00665 0.39 -0.4 136,867 - PS417_00665 0.39 +2.6 137,000 - PS417_00665 0.48 -1.8
Or see this region's nucleotide sequence