Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06530 and PS417_06535 are separated by 27 nucleotides PS417_06535 and PS417_06540 are separated by 269 nucleotides
PS417_06530: PS417_06530 - membrane protein, at 1,447,205 to 1,448,347
_06530
PS417_06535: PS417_06535 - pyridoxine 5'-phosphate oxidase, at 1,448,375 to 1,449,022
_06535
PS417_06540: PS417_06540 - membrane protein, at 1,449,292 to 1,449,756
_06540
Position (kb)
1448
1449
1450 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1447.392 kb on + strand, within PS417_06530 at 1447.685 kb on + strand, within PS417_06530 at 1447.781 kb on + strand, within PS417_06530 at 1447.781 kb on + strand, within PS417_06530 at 1448.123 kb on + strand, within PS417_06530 at 1448.366 kb on + strand at 1449.096 kb on + strand at 1449.096 kb on + strand at 1449.132 kb on - strand at 1449.143 kb on - strand at 1449.143 kb on - strand at 1449.155 kb on + strand at 1449.155 kb on + strand at 1449.156 kb on - strand at 1449.156 kb on - strand at 1449.197 kb on - strand at 1449.197 kb on - strand at 1449.199 kb on + strand at 1449.199 kb on + strand at 1449.261 kb on + strand at 1449.291 kb on + strand at 1449.292 kb on - strand at 1449.292 kb on - strand at 1449.298 kb on - strand at 1449.298 kb on - strand at 1449.298 kb on - strand at 1449.298 kb on - strand at 1449.309 kb on - strand at 1449.309 kb on - strand at 1449.459 kb on + strand, within PS417_06540 at 1449.459 kb on + strand, within PS417_06540 at 1449.623 kb on + strand, within PS417_06540 at 1449.735 kb on + strand at 1449.735 kb on + strand at 1449.736 kb on - strand at 1449.736 kb on - strand at 1449.736 kb on - strand at 1449.736 kb on - strand at 1449.738 kb on + strand at 1449.739 kb on - strand at 1449.773 kb on + strand at 1449.814 kb on + strand at 1449.815 kb on - strand at 1449.868 kb on + strand at 1449.869 kb on - strand at 1449.947 kb on - strand at 1449.950 kb on - strand at 1449.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 1,447,392 + PS417_06530 0.16 -2.4 1,447,685 + PS417_06530 0.42 -1.6 1,447,781 + PS417_06530 0.50 -0.3 1,447,781 + PS417_06530 0.50 -3.7 1,448,123 + PS417_06530 0.80 -1.6 1,448,366 + +0.2 1,449,096 + +0.6 1,449,096 + +0.6 1,449,132 - -1.5 1,449,143 - +1.4 1,449,143 - -0.0 1,449,155 + -0.7 1,449,155 + +1.2 1,449,156 - +0.8 1,449,156 - -0.3 1,449,197 - +0.9 1,449,197 - +0.0 1,449,199 + -0.5 1,449,199 + -0.8 1,449,261 + -0.3 1,449,291 + +0.4 1,449,292 - +0.1 1,449,292 - -0.9 1,449,298 - -0.1 1,449,298 - +0.2 1,449,298 - +0.0 1,449,298 - +1.1 1,449,309 - -0.3 1,449,309 - +0.4 1,449,459 + PS417_06540 0.36 +0.5 1,449,459 + PS417_06540 0.36 +0.9 1,449,623 + PS417_06540 0.71 -1.8 1,449,735 + -1.2 1,449,735 + +0.1 1,449,736 - +0.5 1,449,736 - +0.1 1,449,736 - +0.5 1,449,736 - +0.2 1,449,738 + -0.6 1,449,739 - -0.7 1,449,773 + +0.0 1,449,814 + +0.1 1,449,815 - -0.9 1,449,868 + -1.0 1,449,869 - -0.3 1,449,947 - +0.3 1,449,950 - -0.8 1,449,950 - -0.1
Or see this region's nucleotide sequence