Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04320 and PS417_04325 are separated by 88 nucleotides PS417_04325 and PS417_04330 are separated by 16 nucleotides PS417_04330 and PS417_04335 are separated by 2 nucleotides
PS417_04320: PS417_04320 - divalent cation transporter, at 968,070 to 968,963
_04320
PS417_04325: PS417_04325 - phosphocarrier protein HPr, at 969,052 to 969,324
_04325
PS417_04330: PS417_04330 - glmZ(sRNA)-inactivating NTPase, at 969,341 to 970,198
_04330
PS417_04335: PS417_04335 - PTS fructose transporter subunit IIA, at 970,201 to 970,665
_04335
Position (kb) 969
970 Strain fitness (log2 ratio) -1
0
1 at 968.059 kb on + strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.138 kb on - strand at 968.148 kb on - strand at 968.432 kb on + strand, within PS417_04320 at 968.432 kb on + strand at 968.432 kb on + strand, within PS417_04320 at 968.433 kb on - strand, within PS417_04320 at 968.454 kb on + strand, within PS417_04320 at 968.534 kb on + strand, within PS417_04320 at 968.961 kb on + strand at 968.979 kb on - strand at 968.979 kb on - strand at 969.042 kb on + strand at 969.042 kb on + strand at 969.043 kb on - strand at 969.071 kb on + strand at 969.071 kb on + strand at 969.072 kb on - strand at 969.072 kb on - strand at 969.075 kb on + strand at 969.075 kb on + strand at 969.075 kb on + strand at 969.076 kb on - strand at 969.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 968,059 + +0.5 968,059 + +1.5 968,059 + +1.3 968,059 + +0.8 968,138 - +0.1 968,148 - -0.5 968,432 + PS417_04320 0.40 +0.2 968,432 + +1.2 968,432 + PS417_04320 0.40 +0.5 968,433 - PS417_04320 0.41 +0.8 968,454 + PS417_04320 0.43 +0.5 968,534 + PS417_04320 0.52 -0.1 968,961 + -0.0 968,979 - +0.5 968,979 - -0.7 969,042 + +0.5 969,042 + +0.4 969,043 - +0.7 969,071 + +0.5 969,071 + +0.1 969,072 - +0.9 969,072 - +0.1 969,075 + -0.3 969,075 + -1.1 969,075 + -0.0 969,076 - +0.3 969,346 + +0.3
Or see this region's nucleotide sequence