Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04310 and PS417_04315 are separated by 1 nucleotides PS417_04315 and PS417_04320 are separated by 33 nucleotides PS417_04320 and PS417_04325 are separated by 88 nucleotides PS417_04325 and PS417_04330 are separated by 16 nucleotides
PS417_04310: PS417_04310 - hypothetical protein, at 966,995 to 967,423
_04310
PS417_04315: PS417_04315 - superoxide dismutase, at 967,425 to 968,036
_04315
PS417_04320: PS417_04320 - divalent cation transporter, at 968,070 to 968,963
_04320
PS417_04325: PS417_04325 - phosphocarrier protein HPr, at 969,052 to 969,324
_04325
PS417_04330: PS417_04330 - glmZ(sRNA)-inactivating NTPase, at 969,341 to 970,198
_04330
Position (kb)
968
969 Strain fitness (log2 ratio)
-1
0
1 at 967.073 kb on + strand, within PS417_04310 at 967.073 kb on + strand, within PS417_04310 at 967.074 kb on - strand, within PS417_04310 at 967.424 kb on + strand at 967.425 kb on - strand at 967.431 kb on + strand at 967.431 kb on + strand at 967.432 kb on - strand at 967.432 kb on - strand at 967.432 kb on - strand at 967.433 kb on + strand at 967.433 kb on + strand at 967.458 kb on + strand at 967.478 kb on + strand at 967.507 kb on - strand, within PS417_04315 at 967.507 kb on - strand, within PS417_04315 at 967.507 kb on - strand, within PS417_04315 at 967.527 kb on + strand, within PS417_04315 at 967.527 kb on + strand, within PS417_04315 at 967.935 kb on + strand, within PS417_04315 at 967.936 kb on - strand, within PS417_04315 at 967.936 kb on - strand, within PS417_04315 at 967.945 kb on - strand, within PS417_04315 at 967.966 kb on - strand, within PS417_04315 at 967.980 kb on + strand at 967.981 kb on - strand at 967.988 kb on + strand at 968.017 kb on - strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.059 kb on + strand at 968.138 kb on - strand at 968.148 kb on - strand at 968.432 kb on + strand, within PS417_04320 at 968.432 kb on + strand at 968.432 kb on + strand, within PS417_04320 at 968.433 kb on - strand, within PS417_04320 at 968.454 kb on + strand, within PS417_04320 at 968.534 kb on + strand, within PS417_04320 at 968.961 kb on + strand at 968.979 kb on - strand at 968.979 kb on - strand at 969.042 kb on + strand at 969.042 kb on + strand at 969.043 kb on - strand at 969.071 kb on + strand at 969.071 kb on + strand at 969.072 kb on - strand at 969.072 kb on - strand at 969.075 kb on + strand at 969.075 kb on + strand at 969.075 kb on + strand at 969.076 kb on - strand at 969.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 967,073 + PS417_04310 0.18 -1.6 967,073 + PS417_04310 0.18 -0.1 967,074 - PS417_04310 0.18 -0.9 967,424 + -0.0 967,425 - +0.2 967,431 + -0.3 967,431 + +0.7 967,432 - +0.2 967,432 - +0.3 967,432 - +0.7 967,433 + +0.8 967,433 + +0.6 967,458 + +1.0 967,478 + +0.4 967,507 - PS417_04315 0.13 +0.1 967,507 - PS417_04315 0.13 -0.3 967,507 - PS417_04315 0.13 +0.6 967,527 + PS417_04315 0.17 +0.1 967,527 + PS417_04315 0.17 +0.8 967,935 + PS417_04315 0.83 -0.2 967,936 - PS417_04315 0.83 +0.7 967,936 - PS417_04315 0.83 +1.1 967,945 - PS417_04315 0.85 +0.0 967,966 - PS417_04315 0.88 -0.5 967,980 + +1.1 967,981 - +0.8 967,988 + -1.5 968,017 - +1.1 968,059 + +0.5 968,059 + +1.5 968,059 + +1.3 968,059 + +0.8 968,138 - +0.1 968,148 - -0.5 968,432 + PS417_04320 0.40 +0.2 968,432 + +1.2 968,432 + PS417_04320 0.40 +0.5 968,433 - PS417_04320 0.41 +0.8 968,454 + PS417_04320 0.43 +0.5 968,534 + PS417_04320 0.52 -0.1 968,961 + -0.0 968,979 - +0.5 968,979 - -0.7 969,042 + +0.5 969,042 + +0.4 969,043 - +0.7 969,071 + +0.5 969,071 + +0.1 969,072 - +0.9 969,072 - +0.1 969,075 + -0.3 969,075 + -1.1 969,075 + -0.0 969,076 - +0.3 969,346 + +0.3
Or see this region's nucleotide sequence