Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04075 and PS417_04080 are separated by 304 nucleotides PS417_04080 and PS417_04085 are separated by 258 nucleotides
PS417_04075: PS417_04075 - peptide ABC transporter substrate-binding protein, at 914,462 to 916,066
_04075
PS417_04080: PS417_04080 - peptide ABC transporter substrate-binding protein, at 916,371 to 917,999
_04080
PS417_04085: PS417_04085 - peptide ABC transporter substrate-binding protein, at 918,258 to 919,859
_04085
Position (kb) 916
917
918 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 915.397 kb on - strand, within PS417_04075 at 915.397 kb on - strand, within PS417_04075 at 915.802 kb on - strand, within PS417_04075 at 915.892 kb on - strand, within PS417_04075 at 915.931 kb on - strand at 915.931 kb on - strand at 916.057 kb on + strand at 916.088 kb on + strand at 916.089 kb on - strand at 916.089 kb on - strand at 916.218 kb on + strand at 916.246 kb on - strand at 916.246 kb on - strand at 916.281 kb on - strand at 916.314 kb on + strand at 916.347 kb on - strand at 916.372 kb on + strand at 916.372 kb on + strand at 916.373 kb on - strand at 916.396 kb on + strand at 916.397 kb on - strand at 916.459 kb on + strand at 916.509 kb on - strand at 916.524 kb on - strand at 916.524 kb on - strand at 916.526 kb on - strand at 916.748 kb on - strand, within PS417_04080 at 917.116 kb on + strand, within PS417_04080 at 917.270 kb on + strand, within PS417_04080 at 917.656 kb on - strand, within PS417_04080 at 917.656 kb on - strand, within PS417_04080 at 917.869 kb on + strand at 917.993 kb on + strand at 917.994 kb on - strand at 918.068 kb on - strand at 918.068 kb on - strand at 918.068 kb on - strand at 918.166 kb on - strand at 918.232 kb on + strand at 918.259 kb on + strand at 918.259 kb on + strand at 918.263 kb on + strand at 918.263 kb on + strand at 918.263 kb on + strand at 918.264 kb on - strand at 918.264 kb on - strand at 918.264 kb on - strand at 918.268 kb on - strand at 918.371 kb on + strand at 918.372 kb on - strand at 918.523 kb on + strand, within PS417_04085 at 918.523 kb on + strand, within PS417_04085 at 918.575 kb on - strand, within PS417_04085 at 918.575 kb on - strand, within PS417_04085 at 918.617 kb on - strand, within PS417_04085 at 918.631 kb on + strand, within PS417_04085 at 918.631 kb on + strand, within PS417_04085 at 918.632 kb on - strand, within PS417_04085 at 918.778 kb on - strand, within PS417_04085 at 918.805 kb on + strand at 918.805 kb on + strand, within PS417_04085 at 918.832 kb on + strand, within PS417_04085 at 918.833 kb on - strand, within PS417_04085 at 918.833 kb on - strand, within PS417_04085 at 918.976 kb on + strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 915,397 - PS417_04075 0.58 -0.7 915,397 - PS417_04075 0.58 +0.8 915,802 - PS417_04075 0.83 -0.1 915,892 - PS417_04075 0.89 +0.6 915,931 - +1.0 915,931 - -0.2 916,057 + +1.0 916,088 + +0.0 916,089 - -0.3 916,089 - +0.2 916,218 + -0.1 916,246 - +0.0 916,246 - +0.2 916,281 - -0.7 916,314 + +0.8 916,347 - +0.4 916,372 + +1.7 916,372 + +3.3 916,373 - +0.9 916,396 + -1.2 916,397 - -0.5 916,459 + +0.8 916,509 - +0.7 916,524 - +0.3 916,524 - -1.5 916,526 - +0.1 916,748 - PS417_04080 0.23 +0.4 917,116 + PS417_04080 0.46 +1.2 917,270 + PS417_04080 0.55 +0.1 917,656 - PS417_04080 0.79 +1.4 917,656 - PS417_04080 0.79 +1.9 917,869 + +0.8 917,993 + +1.2 917,994 - +0.5 918,068 - -1.5 918,068 - -0.1 918,068 - +0.3 918,166 - -0.3 918,232 + -1.5 918,259 + +0.4 918,259 + +1.8 918,263 + +0.9 918,263 + +0.7 918,263 + -0.4 918,264 - +0.2 918,264 - -0.5 918,264 - -0.1 918,268 - +0.8 918,371 + -0.0 918,372 - -0.8 918,523 + PS417_04085 0.17 +0.2 918,523 + PS417_04085 0.17 +0.0 918,575 - PS417_04085 0.20 -0.7 918,575 - PS417_04085 0.20 -0.8 918,617 - PS417_04085 0.22 -0.5 918,631 + PS417_04085 0.23 +0.4 918,631 + PS417_04085 0.23 -0.4 918,632 - PS417_04085 0.23 -1.3 918,778 - PS417_04085 0.32 +0.2 918,805 + -1.1 918,805 + PS417_04085 0.34 -2.5 918,832 + PS417_04085 0.36 +0.2 918,833 - PS417_04085 0.36 +0.1 918,833 - PS417_04085 0.36 +0.7 918,976 + PS417_04085 0.45 +0.1 918,977 - PS417_04085 0.45 -2.1 918,977 - PS417_04085 0.45 +0.4 918,977 - PS417_04085 0.45 +0.5
Or see this region's nucleotide sequence