Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03085 and PS417_03090 are separated by 1 nucleotides PS417_03090 and PS417_03095 are separated by 10 nucleotides PS417_03095 and PS417_03100 overlap by 4 nucleotides
PS417_03085: PS417_03085 - type II secretion system protein F, at 708,325 to 709,212
_03085
PS417_03090: PS417_03090 - type II secretion system protein F, at 709,214 to 710,095
_03090
PS417_03095: PS417_03095 - ATPase, at 710,106 to 711,377
_03095
PS417_03100: PS417_03100 - pilus assembly protein, at 711,374 to 712,567
_03100
Position (kb) 710
711
712 Strain fitness (log2 ratio) -2
-1
0
1 at 709.323 kb on + strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.324 kb on - strand, within PS417_03090 at 709.348 kb on - strand, within PS417_03090 at 709.384 kb on - strand, within PS417_03090 at 709.549 kb on - strand, within PS417_03090 at 709.741 kb on + strand at 709.742 kb on - strand, within PS417_03090 at 709.776 kb on + strand, within PS417_03090 at 709.777 kb on - strand, within PS417_03090 at 710.208 kb on - strand at 710.218 kb on + strand at 710.218 kb on + strand at 710.219 kb on - strand at 710.219 kb on - strand at 710.219 kb on - strand at 710.219 kb on - strand at 710.219 kb on - strand at 710.219 kb on - strand at 710.460 kb on + strand, within PS417_03095 at 710.460 kb on + strand, within PS417_03095 at 710.461 kb on - strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.599 kb on - strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.186 kb on - strand, within PS417_03095 at 711.186 kb on - strand, within PS417_03095 at 711.197 kb on - strand, within PS417_03095 at 711.289 kb on + strand at 711.289 kb on + strand at 711.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 709,323 + PS417_03090 0.12 +0.7 709,324 - PS417_03090 0.12 +0.1 709,324 - PS417_03090 0.12 +0.5 709,324 - PS417_03090 0.12 -0.1 709,348 - PS417_03090 0.15 +0.4 709,384 - PS417_03090 0.19 -0.6 709,549 - PS417_03090 0.38 +0.8 709,741 + +0.9 709,742 - PS417_03090 0.60 -0.7 709,776 + PS417_03090 0.64 +0.3 709,777 - PS417_03090 0.64 -0.0 710,208 - +0.0 710,218 + +0.7 710,218 + +0.2 710,219 - +0.0 710,219 - +0.1 710,219 - -0.2 710,219 - +1.5 710,219 - +0.1 710,219 - -0.3 710,460 + PS417_03095 0.28 +0.3 710,460 + PS417_03095 0.28 +1.1 710,461 - PS417_03095 0.28 +0.8 710,598 + PS417_03095 0.39 +0.7 710,598 + PS417_03095 0.39 +0.2 710,598 + PS417_03095 0.39 -0.6 710,598 + PS417_03095 0.39 +0.2 710,599 - PS417_03095 0.39 -1.8 711,185 + PS417_03095 0.85 -0.1 711,185 + PS417_03095 0.85 +0.5 711,185 + PS417_03095 0.85 +1.1 711,186 - PS417_03095 0.85 +0.8 711,186 - PS417_03095 0.85 +0.2 711,197 - PS417_03095 0.86 +1.5 711,289 + +1.4 711,289 + +1.0 711,290 - -0.3
Or see this region's nucleotide sequence