Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02810 and PS417_02815 are separated by 31 nucleotides PS417_02815 and PS417_02820 are separated by 12 nucleotides PS417_02820 and PS417_02825 are separated by 8 nucleotides
PS417_02810: PS417_02810 - urease accessory protein UreD, at 636,914 to 637,753
_02810
PS417_02815: PS417_02815 - urea ABC transporter ATP-binding protein, at 637,785 to 638,483
_02815
PS417_02820: PS417_02820 - urea ABC transporter ATP-binding protein, at 638,496 to 639,317
_02820
PS417_02825: PS417_02825 - amino acid ABC transporter permease, at 639,326 to 640,393
_02825
Position (kb) 638
639
640 Strain fitness (log2 ratio) -1
0
1
2 at 637.806 kb on + strand at 637.806 kb on + strand at 637.806 kb on + strand at 637.806 kb on + strand at 637.806 kb on + strand at 637.874 kb on - strand, within PS417_02815 at 637.903 kb on + strand, within PS417_02815 at 637.904 kb on - strand, within PS417_02815 at 638.134 kb on + strand, within PS417_02815 at 638.456 kb on - strand at 638.509 kb on + strand at 638.877 kb on + strand, within PS417_02820 at 638.981 kb on + strand, within PS417_02820 at 639.157 kb on + strand, within PS417_02820 at 639.363 kb on + strand at 639.576 kb on + strand, within PS417_02825 at 639.576 kb on + strand, within PS417_02825 at 639.577 kb on - strand, within PS417_02825 at 639.577 kb on - strand, within PS417_02825 at 640.111 kb on - strand, within PS417_02825 at 640.111 kb on - strand, within PS417_02825 at 640.215 kb on + strand, within PS417_02825 at 640.248 kb on + strand, within PS417_02825 at 640.258 kb on + strand, within PS417_02825 at 640.259 kb on - strand, within PS417_02825
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 637,806 + +0.3 637,806 + +1.1 637,806 + -0.0 637,806 + -0.1 637,806 + +2.3 637,874 - PS417_02815 0.13 +0.4 637,903 + PS417_02815 0.17 -0.5 637,904 - PS417_02815 0.17 -0.2 638,134 + PS417_02815 0.50 +0.1 638,456 - +0.4 638,509 + +0.3 638,877 + PS417_02820 0.46 -1.3 638,981 + PS417_02820 0.59 -0.4 639,157 + PS417_02820 0.80 -0.6 639,363 + -1.3 639,576 + PS417_02825 0.23 -0.5 639,576 + PS417_02825 0.23 +0.2 639,577 - PS417_02825 0.24 +1.1 639,577 - PS417_02825 0.24 +0.4 640,111 - PS417_02825 0.74 +0.1 640,111 - PS417_02825 0.74 -0.2 640,215 + PS417_02825 0.83 +0.5 640,248 + PS417_02825 0.86 +0.8 640,258 + PS417_02825 0.87 -0.2 640,259 - PS417_02825 0.87 -0.2
Or see this region's nucleotide sequence