Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27530 and PS417_27535 are separated by 138 nucleotides PS417_27535 and PS417_27540 are separated by 505 nucleotides
PS417_27530: PS417_27530 - porphobilinogen deaminase, at 5,939,338 to 5,940,279
_27530
PS417_27535: PS417_27535 - chemotaxis protein CheY, at 5,940,418 to 5,941,164
_27535
PS417_27540: PS417_27540 - argininosuccinate lyase, at 5,941,670 to 5,943,064
_27540
Position (kb)
5940
5941
5942 Strain fitness (log2 ratio)
-1
0
1 at 5940.299 kb on - strand at 5940.315 kb on - strand at 5940.330 kb on + strand at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.665 kb on + strand, within PS417_27535 at 5940.666 kb on - strand, within PS417_27535 at 5940.666 kb on - strand, within PS417_27535 at 5941.078 kb on + strand, within PS417_27535 at 5941.078 kb on + strand, within PS417_27535 at 5941.079 kb on - strand, within PS417_27535 at 5941.164 kb on + strand at 5941.206 kb on + strand at 5941.206 kb on + strand at 5941.207 kb on - strand at 5941.251 kb on - strand at 5941.290 kb on - strand at 5941.290 kb on - strand at 5941.290 kb on - strand at 5941.372 kb on - strand at 5941.391 kb on + strand at 5941.438 kb on + strand at 5941.438 kb on + strand at 5941.439 kb on - strand at 5941.452 kb on + strand at 5941.453 kb on - strand at 5941.489 kb on + strand at 5941.504 kb on + strand at 5941.505 kb on - strand at 5941.505 kb on - strand at 5941.505 kb on - strand at 5941.505 kb on - strand at 5941.569 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 5,940,299 - -0.4 5,940,315 - -0.0 5,940,330 + +0.4 5,940,665 + PS417_27535 0.33 -0.7 5,940,665 + PS417_27535 0.33 -0.1 5,940,665 + PS417_27535 0.33 -1.4 5,940,665 + PS417_27535 0.33 -0.5 5,940,665 + PS417_27535 0.33 -0.1 5,940,665 + PS417_27535 0.33 -0.8 5,940,665 + PS417_27535 0.33 -1.3 5,940,666 - PS417_27535 0.33 -0.4 5,940,666 - PS417_27535 0.33 -0.2 5,941,078 + PS417_27535 0.88 -0.4 5,941,078 + PS417_27535 0.88 -0.5 5,941,079 - PS417_27535 0.88 -0.7 5,941,164 + -1.1 5,941,206 + -0.7 5,941,206 + -0.8 5,941,207 - +0.5 5,941,251 - -0.5 5,941,290 - +0.9 5,941,290 - +0.3 5,941,290 - +1.1 5,941,372 - -0.1 5,941,391 + +0.3 5,941,438 + +0.5 5,941,438 + -0.2 5,941,439 - +0.1 5,941,452 + -0.7 5,941,453 - +0.9 5,941,489 + -0.8 5,941,504 + -0.4 5,941,505 - +1.0 5,941,505 - +0.5 5,941,505 - +0.3 5,941,505 - -0.0 5,941,569 + -0.2
Or see this region's nucleotide sequence