Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26575 and PS417_26580 are separated by 106 nucleotides PS417_26580 and PS417_26585 are separated by 1 nucleotides PS417_26585 and PS417_26590 are separated by 67 nucleotides PS417_26590 and PS417_26595 overlap by 4 nucleotides
PS417_26575: PS417_26575 - LysR family transcriptional regulator, at 5,746,671 to 5,747,591
_26575
PS417_26580: PS417_26580 - malonate transporter, at 5,747,698 to 5,748,462
_26580
PS417_26585: PS417_26585 - malonate carrier protein, at 5,748,464 to 5,748,868
_26585
PS417_26590: PS417_26590 - malonate decarboxylase subunit epsilon, at 5,748,936 to 5,749,835
_26590
PS417_26595: PS417_26595 - phosphoribosyl-dephospho-CoA transferase, at 5,749,832 to 5,750,419
_26595
Position (kb) 5748
5749 Strain fitness (log2 ratio) -2
-1
0
1 at 5747.493 kb on - strand, within PS417_26575 at 5747.493 kb on - strand, within PS417_26575 at 5747.565 kb on + strand at 5747.565 kb on + strand at 5747.566 kb on - strand at 5747.566 kb on - strand at 5747.566 kb on - strand at 5747.726 kb on + strand at 5748.018 kb on + strand, within PS417_26580 at 5748.020 kb on + strand, within PS417_26580 at 5748.020 kb on + strand, within PS417_26580 at 5748.021 kb on - strand, within PS417_26580 at 5748.021 kb on - strand, within PS417_26580 at 5748.324 kb on + strand, within PS417_26580 at 5748.462 kb on + strand at 5748.463 kb on - strand at 5748.463 kb on - strand at 5748.463 kb on - strand at 5748.463 kb on - strand at 5748.657 kb on + strand, within PS417_26585 at 5748.657 kb on + strand, within PS417_26585 at 5748.657 kb on + strand, within PS417_26585 at 5748.858 kb on + strand at 5748.862 kb on + strand at 5748.863 kb on - strand at 5748.863 kb on - strand at 5748.949 kb on - strand at 5749.097 kb on - strand, within PS417_26590 at 5749.107 kb on + strand, within PS417_26590 at 5749.107 kb on + strand, within PS417_26590 at 5749.397 kb on + strand, within PS417_26590 at 5749.408 kb on + strand, within PS417_26590 at 5749.619 kb on - strand, within PS417_26590 at 5749.669 kb on - strand, within PS417_26590
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 5,747,493 - PS417_26575 0.89 -0.2 5,747,493 - PS417_26575 0.89 -2.0 5,747,565 + +0.0 5,747,565 + -0.1 5,747,566 - -0.4 5,747,566 - -0.7 5,747,566 - +1.5 5,747,726 + +0.2 5,748,018 + PS417_26580 0.42 -0.3 5,748,020 + PS417_26580 0.42 +0.7 5,748,020 + PS417_26580 0.42 -0.2 5,748,021 - PS417_26580 0.42 -0.1 5,748,021 - PS417_26580 0.42 -0.2 5,748,324 + PS417_26580 0.82 -1.3 5,748,462 + +0.6 5,748,463 - -0.8 5,748,463 - +0.8 5,748,463 - +0.9 5,748,463 - +1.0 5,748,657 + PS417_26585 0.48 +0.0 5,748,657 + PS417_26585 0.48 +0.4 5,748,657 + PS417_26585 0.48 +1.1 5,748,858 + +1.5 5,748,862 + +0.6 5,748,863 - +1.5 5,748,863 - +0.3 5,748,949 - -0.0 5,749,097 - PS417_26590 0.18 -1.6 5,749,107 + PS417_26590 0.19 -0.1 5,749,107 + PS417_26590 0.19 -0.8 5,749,397 + PS417_26590 0.51 +0.4 5,749,408 + PS417_26590 0.52 +0.2 5,749,619 - PS417_26590 0.76 -0.3 5,749,669 - PS417_26590 0.81 +0.0
Or see this region's nucleotide sequence