Strain Fitness in Pseudomonas simiae WCS417 around PS417_22275

Experiment: R2A with Fusaric 120 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22265 and PS417_22270 are separated by 0 nucleotidesPS417_22270 and PS417_22275 are separated by 13 nucleotidesPS417_22275 and PS417_22280 are separated by 87 nucleotidesPS417_22280 and PS417_22285 are separated by 1 nucleotides PS417_22265: PS417_22265 - chromosome segregation protein ScpA, at 4,824,904 to 4,825,722 _22265 PS417_22270: PS417_22270 - hypothetical protein, at 4,825,723 to 4,826,352 _22270 PS417_22275: PS417_22275 - phosphoesterase, at 4,826,366 to 4,827,229 _22275 PS417_22280: PS417_22280 - septation protein A, at 4,827,317 to 4,827,913 _22280 PS417_22285: PS417_22285 - hypothetical protein, at 4,827,915 to 4,828,214 _22285 Position (kb) 4826 4827 4828Strain fitness (log2 ratio) -2 -1 0 1 2at 4825.481 kb on + strand, within PS417_22265at 4825.482 kb on - strand, within PS417_22265at 4825.490 kb on + strand, within PS417_22265at 4825.490 kb on + strand, within PS417_22265at 4825.491 kb on - strand, within PS417_22265at 4825.491 kb on - strand, within PS417_22265at 4825.553 kb on + strand, within PS417_22265at 4825.619 kb on + strand, within PS417_22265at 4825.620 kb on - strand, within PS417_22265at 4825.620 kb on - strand, within PS417_22265at 4825.620 kb on - strand, within PS417_22265at 4825.655 kb on + strandat 4825.656 kb on - strandat 4825.656 kb on - strandat 4825.656 kb on - strandat 4826.055 kb on + strand, within PS417_22270at 4826.063 kb on + strand, within PS417_22270at 4826.063 kb on + strand, within PS417_22270at 4826.064 kb on - strand, within PS417_22270at 4826.360 kb on - strandat 4826.360 kb on - strandat 4826.593 kb on + strand, within PS417_22275at 4826.594 kb on - strand, within PS417_22275at 4826.594 kb on - strand, within PS417_22275at 4826.595 kb on + strand, within PS417_22275at 4826.595 kb on + strand, within PS417_22275at 4826.595 kb on + strand, within PS417_22275at 4826.596 kb on - strand, within PS417_22275at 4826.638 kb on - strand, within PS417_22275at 4826.834 kb on - strand, within PS417_22275at 4826.915 kb on + strand, within PS417_22275at 4826.997 kb on + strand, within PS417_22275at 4827.239 kb on + strandat 4827.282 kb on + strandat 4827.282 kb on + strandat 4827.283 kb on - strandat 4827.285 kb on + strandat 4827.285 kb on + strandat 4827.922 kb on - strandat 4828.152 kb on + strand, within PS417_22285at 4828.152 kb on + strand, within PS417_22285at 4828.153 kb on - strand, within PS417_22285at 4828.153 kb on - strand, within PS417_22285at 4828.153 kb on - strand, within PS417_22285at 4828.171 kb on - strand, within PS417_22285

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
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4,825,481 + PS417_22265 0.70 -0.4
4,825,482 - PS417_22265 0.71 +0.1
4,825,490 + PS417_22265 0.72 -0.5
4,825,490 + PS417_22265 0.72 -0.0
4,825,491 - PS417_22265 0.72 +0.4
4,825,491 - PS417_22265 0.72 +0.4
4,825,553 + PS417_22265 0.79 -0.1
4,825,619 + PS417_22265 0.87 +0.2
4,825,620 - PS417_22265 0.87 +0.1
4,825,620 - PS417_22265 0.87 -0.2
4,825,620 - PS417_22265 0.87 -0.5
4,825,655 + -0.1
4,825,656 - +0.8
4,825,656 - -0.0
4,825,656 - +1.4
4,826,055 + PS417_22270 0.53 -0.2
4,826,063 + PS417_22270 0.54 -1.8
4,826,063 + PS417_22270 0.54 -1.8
4,826,064 - PS417_22270 0.54 -0.1
4,826,360 - -0.4
4,826,360 - +0.1
4,826,593 + PS417_22275 0.26 -0.5
4,826,594 - PS417_22275 0.26 -0.2
4,826,594 - PS417_22275 0.26 -0.7
4,826,595 + PS417_22275 0.27 -0.7
4,826,595 + PS417_22275 0.27 -0.4
4,826,595 + PS417_22275 0.27 -0.3
4,826,596 - PS417_22275 0.27 -1.2
4,826,638 - PS417_22275 0.31 +0.9
4,826,834 - PS417_22275 0.54 -0.1
4,826,915 + PS417_22275 0.64 -0.9
4,826,997 + PS417_22275 0.73 -1.8
4,827,239 + -0.2
4,827,282 + -1.3
4,827,282 + +2.3
4,827,283 - +0.5
4,827,285 + -0.2
4,827,285 + -0.1
4,827,922 - -2.0
4,828,152 + PS417_22285 0.79 -0.7
4,828,152 + PS417_22285 0.79 -0.1
4,828,153 - PS417_22285 0.79 -0.2
4,828,153 - PS417_22285 0.79 -0.5
4,828,153 - PS417_22285 0.79 -0.3
4,828,171 - PS417_22285 0.85 -0.2

Or see this region's nucleotide sequence