Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21840 and PS417_21845 are separated by 75 nucleotides PS417_21845 and PS417_21850 overlap by 4 nucleotides PS417_21850 and PS417_21855 are separated by 80 nucleotides
PS417_21840: PS417_21840 - chemotaxis protein, at 4,742,540 to 4,743,859
_21840
PS417_21845: PS417_21845 - membrane protein, at 4,743,935 to 4,744,453
_21845
PS417_21850: PS417_21850 - LysR family transcriptional regulator, at 4,744,450 to 4,745,328
_21850
PS417_21855: PS417_21855 - hypothetical protein, at 4,745,409 to 4,746,110
_21855
Position (kb)
4743
4744
4745 Strain fitness (log2 ratio)
-1
0
1
2 at 4743.206 kb on - strand, within PS417_21840 at 4743.239 kb on + strand, within PS417_21840 at 4743.240 kb on - strand, within PS417_21840 at 4743.252 kb on - strand, within PS417_21840 at 4743.353 kb on + strand, within PS417_21840 at 4743.894 kb on + strand at 4743.894 kb on + strand at 4743.894 kb on + strand at 4743.895 kb on - strand at 4743.895 kb on - strand at 4743.896 kb on + strand at 4744.073 kb on - strand, within PS417_21845 at 4744.341 kb on + strand, within PS417_21845 at 4744.342 kb on - strand, within PS417_21845 at 4744.451 kb on + strand at 4744.818 kb on - strand, within PS417_21850 at 4745.306 kb on + strand at 4745.367 kb on + strand at 4745.367 kb on + strand at 4745.367 kb on + strand at 4745.396 kb on + strand at 4745.403 kb on + strand at 4745.403 kb on + strand at 4745.403 kb on + strand at 4745.404 kb on - strand at 4745.404 kb on - strand at 4745.404 kb on - strand at 4745.448 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 4,743,206 - PS417_21840 0.50 -0.7 4,743,239 + PS417_21840 0.53 -0.5 4,743,240 - PS417_21840 0.53 -0.1 4,743,252 - PS417_21840 0.54 +1.1 4,743,353 + PS417_21840 0.62 +0.4 4,743,894 + +1.0 4,743,894 + -0.3 4,743,894 + +0.0 4,743,895 - -0.2 4,743,895 - -0.5 4,743,896 + +0.7 4,744,073 - PS417_21845 0.27 -0.3 4,744,341 + PS417_21845 0.78 -1.2 4,744,342 - PS417_21845 0.78 -0.7 4,744,451 + -0.3 4,744,818 - PS417_21850 0.42 +0.1 4,745,306 + +0.4 4,745,367 + +0.4 4,745,367 + -0.0 4,745,367 + -0.8 4,745,396 + -1.0 4,745,403 + -0.0 4,745,403 + +1.8 4,745,403 + +0.0 4,745,404 - -1.5 4,745,404 - +0.1 4,745,404 - -1.5 4,745,448 + -0.3
Or see this region's nucleotide sequence