Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21700 and PS417_21705 are separated by 51 nucleotides PS417_21705 and PS417_21710 are separated by 245 nucleotides
PS417_21700: PS417_21700 - arginine N-succinyltransferase, at 4,707,176 to 4,708,201
_21700
PS417_21705: PS417_21705 - arginine N-succinyltransferase, at 4,708,253 to 4,709,272
_21705
PS417_21710: PS417_21710 - Succinylornithine transaminase (EC 2.6.1.81) (from data) , at 4,709,518 to 4,710,738
_21710
Position (kb)
4708
4709
4710 Strain fitness (log2 ratio)
-1
0
1 at 4707.463 kb on - strand, within PS417_21700 at 4707.631 kb on - strand, within PS417_21700 at 4707.901 kb on + strand, within PS417_21700 at 4707.901 kb on + strand, within PS417_21700 at 4707.902 kb on - strand, within PS417_21700 at 4707.948 kb on + strand, within PS417_21700 at 4708.205 kb on - strand at 4708.345 kb on - strand at 4708.524 kb on + strand, within PS417_21705 at 4708.525 kb on - strand, within PS417_21705 at 4708.633 kb on - strand, within PS417_21705 at 4708.633 kb on - strand, within PS417_21705 at 4708.633 kb on - strand, within PS417_21705 at 4708.633 kb on - strand, within PS417_21705 at 4708.633 kb on - strand, within PS417_21705 at 4708.708 kb on - strand, within PS417_21705 at 4709.010 kb on + strand, within PS417_21705 at 4709.011 kb on - strand, within PS417_21705 at 4710.220 kb on - strand, within PS417_21710 at 4710.222 kb on - strand, within PS417_21710 at 4710.270 kb on - strand, within PS417_21710 at 4710.270 kb on - strand, within PS417_21710 at 4710.270 kb on - strand, within PS417_21710
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 4,707,463 - PS417_21700 0.28 +0.7 4,707,631 - PS417_21700 0.44 +0.1 4,707,901 + PS417_21700 0.71 +0.3 4,707,901 + PS417_21700 0.71 -0.3 4,707,902 - PS417_21700 0.71 +0.3 4,707,948 + PS417_21700 0.75 +0.0 4,708,205 - +0.3 4,708,345 - +1.3 4,708,524 + PS417_21705 0.27 +0.7 4,708,525 - PS417_21705 0.27 +0.5 4,708,633 - PS417_21705 0.37 +1.0 4,708,633 - PS417_21705 0.37 +1.0 4,708,633 - PS417_21705 0.37 +0.2 4,708,633 - PS417_21705 0.37 +1.5 4,708,633 - PS417_21705 0.37 -0.1 4,708,708 - PS417_21705 0.45 +0.3 4,709,010 + PS417_21705 0.74 +0.0 4,709,011 - PS417_21705 0.74 -1.0 4,710,220 - PS417_21710 0.57 -0.1 4,710,222 - PS417_21710 0.58 -0.4 4,710,270 - PS417_21710 0.62 +0.3 4,710,270 - PS417_21710 0.62 -0.5 4,710,270 - PS417_21710 0.62 -0.5
Or see this region's nucleotide sequence