Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20775 and PS417_20780 are separated by 1 nucleotides PS417_20780 and PS417_20785 are separated by 152 nucleotides PS417_20785 and PS417_20790 are separated by 80 nucleotides
PS417_20775: PS417_20775 - coproporphyrinogen III oxidase, at 4,513,584 to 4,514,966
_20775
PS417_20780: PS417_20780 - hypothetical protein, at 4,514,968 to 4,515,435
_20780
PS417_20785: PS417_20785 - transcriptional regulator, at 4,515,588 to 4,516,322
_20785
PS417_20790: PS417_20790 - adenine phosphoribosyltransferase, at 4,516,403 to 4,516,951
_20790
Position (kb)
4514
4515
4516 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4514.445 kb on + strand, within PS417_20775 at 4514.532 kb on + strand, within PS417_20775 at 4514.532 kb on + strand, within PS417_20775 at 4514.923 kb on - strand at 4515.073 kb on + strand, within PS417_20780 at 4515.073 kb on + strand, within PS417_20780 at 4515.073 kb on + strand, within PS417_20780 at 4515.073 kb on + strand, within PS417_20780 at 4515.074 kb on - strand, within PS417_20780 at 4515.126 kb on + strand, within PS417_20780 at 4515.127 kb on - strand, within PS417_20780 at 4515.416 kb on + strand at 4515.416 kb on + strand at 4515.417 kb on - strand at 4515.454 kb on + strand at 4515.454 kb on + strand at 4515.455 kb on - strand at 4515.455 kb on - strand at 4515.455 kb on - strand at 4515.458 kb on + strand at 4515.459 kb on - strand at 4515.459 kb on - strand at 4515.459 kb on - strand at 4515.459 kb on - strand at 4515.459 kb on - strand at 4515.459 kb on - strand at 4515.558 kb on + strand at 4515.558 kb on + strand at 4515.558 kb on + strand at 4515.558 kb on + strand at 4515.784 kb on + strand, within PS417_20785 at 4515.784 kb on + strand, within PS417_20785 at 4515.784 kb on + strand, within PS417_20785 at 4516.180 kb on - strand, within PS417_20785 at 4516.269 kb on - strand at 4516.363 kb on + strand at 4516.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 4,514,445 + PS417_20775 0.62 +0.7 4,514,532 + PS417_20775 0.69 +1.8 4,514,532 + PS417_20775 0.69 +1.1 4,514,923 - +0.2 4,515,073 + PS417_20780 0.22 +0.8 4,515,073 + PS417_20780 0.22 +0.2 4,515,073 + PS417_20780 0.22 -0.0 4,515,073 + PS417_20780 0.22 +1.2 4,515,074 - PS417_20780 0.23 +0.1 4,515,126 + PS417_20780 0.34 +1.0 4,515,127 - PS417_20780 0.34 -0.1 4,515,416 + -0.3 4,515,416 + +0.8 4,515,417 - +0.3 4,515,454 + -0.6 4,515,454 + -0.1 4,515,455 - +0.0 4,515,455 - +0.5 4,515,455 - -0.4 4,515,458 + -0.2 4,515,459 - +0.6 4,515,459 - -0.6 4,515,459 - +0.0 4,515,459 - -0.1 4,515,459 - -0.4 4,515,459 - -0.6 4,515,558 + -2.4 4,515,558 + +0.6 4,515,558 + -0.6 4,515,558 + -0.3 4,515,784 + PS417_20785 0.27 +1.1 4,515,784 + PS417_20785 0.27 +1.0 4,515,784 + PS417_20785 0.27 +0.5 4,516,180 - PS417_20785 0.81 +0.6 4,516,269 - +0.5 4,516,363 + +0.6 4,516,366 - +0.1
Or see this region's nucleotide sequence