Strain Fitness in Pseudomonas simiae WCS417 around PS417_20610
Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | R2A with Fusaric 120 ug/mL |
|---|---|---|---|---|---|
| remove | |||||
| 4,479,005 | - | PS417_20605 | 0.69 | +1.0 | |
| 4,479,160 | - | PS417_20605 | 0.80 | +0.2 | |
| 4,479,223 | + | PS417_20605 | 0.84 | -0.3 | |
| 4,479,284 | + | +1.5 | |||
| 4,479,540 | + | -0.2 | |||
| 4,479,540 | + | +0.6 | |||
| 4,479,800 | - | +0.5 | |||
| 4,480,145 | - | PS417_20610 | 0.34 | +0.5 | |
| 4,480,145 | - | PS417_20610 | 0.34 | -1.8 | |
| 4,480,682 | + | -0.9 | |||
| 4,480,764 | + | -0.2 | |||
| 4,480,765 | - | -0.1 | |||
| 4,480,856 | + | -0.7 | |||
| 4,480,857 | - | -0.1 | |||
| 4,480,919 | - | +0.3 | |||
| 4,481,014 | + | -0.2 | |||
| 4,481,017 | + | -0.4 | |||
| 4,481,018 | - | +0.2 | |||
| 4,481,018 | - | +0.1 | |||
| 4,481,018 | - | -0.5 | |||
| 4,481,018 | - | -0.1 | |||
| 4,481,018 | - | +2.5 | |||
| 4,481,018 | - | -2.0 | |||
| 4,481,024 | + | +0.5 | |||
| 4,481,076 | + | +0.7 | |||
| 4,481,085 | + | +2.8 | |||
| 4,481,085 | + | +0.1 | |||
| 4,481,085 | + | +0.7 | |||
| 4,481,085 | + | +0.2 | |||
| 4,481,085 | + | +1.2 | |||
| 4,481,085 | + | -0.3 | |||
| 4,481,085 | + | +0.3 | |||
| 4,481,086 | - | -0.7 | |||
| 4,481,086 | - | -0.3 | |||
| 4,481,344 | - | +0.3 | |||
| 4,481,347 | - | +0.9 | |||
| 4,481,458 | + | -0.2 | |||
| 4,481,464 | - | -0.0 |
Or see this region's nucleotide sequence