Strain Fitness in Pseudomonas simiae WCS417 around PS417_17755
Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | R2A with Fusaric 120 ug/mL |
|---|---|---|---|---|---|
| remove | |||||
| 3,874,923 | - | PS417_17750 | 0.45 | +0.5 | |
| 3,875,058 | - | PS417_17750 | 0.54 | -0.0 | |
| 3,875,129 | + | PS417_17750 | 0.59 | +0.0 | |
| 3,875,129 | + | PS417_17750 | 0.59 | +0.1 | |
| 3,875,130 | - | PS417_17750 | 0.59 | +0.4 | |
| 3,875,136 | - | PS417_17750 | 0.60 | -0.7 | |
| 3,875,139 | - | PS417_17750 | 0.60 | -1.2 | |
| 3,875,361 | - | PS417_17750 | 0.75 | +0.0 | |
| 3,875,697 | + | -0.0 | |||
| 3,875,733 | + | -0.0 | |||
| 3,875,734 | - | +0.4 | |||
| 3,875,734 | - | -0.1 | |||
| 3,875,782 | + | +0.8 | |||
| 3,875,782 | + | +0.3 | |||
| 3,875,821 | - | -0.1 | |||
| 3,875,900 | - | PS417_17755 | 0.16 | -0.8 | |
| 3,875,928 | + | PS417_17755 | 0.24 | +1.5 | |
| 3,876,024 | - | PS417_17755 | 0.51 | +0.2 | |
| 3,876,178 | + | -1.4 | |||
| 3,876,281 | + | +0.1 | |||
| 3,876,389 | + | -0.2 | |||
| 3,876,390 | - | -0.6 | |||
| 3,876,390 | - | +0.1 | |||
| 3,876,459 | + | +1.5 | |||
| 3,876,552 | + | -0.5 | |||
| 3,876,552 | + | -0.2 | |||
| 3,876,553 | - | -1.0 | |||
| 3,876,553 | - | -0.3 | |||
| 3,876,553 | - | -0.4 | |||
| 3,876,636 | + | +0.5 | |||
| 3,876,875 | + | +0.7 | |||
| 3,876,875 | + | +0.1 | |||
| 3,876,875 | + | -0.1 | |||
| 3,876,875 | + | -0.1 | |||
| 3,876,876 | - | -0.1 | |||
| 3,877,189 | + | +0.3 | |||
| 3,877,192 | - | +0.1 |
Or see this region's nucleotide sequence