Strain Fitness in Pseudomonas simiae WCS417 around PS417_15935
Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | R2A with Fusaric 120 ug/mL |
|---|---|---|---|---|---|
| remove | |||||
| 3,486,253 | + | PS417_15930 | 0.41 | -0.3 | |
| 3,486,254 | - | PS417_15930 | 0.41 | -0.9 | |
| 3,486,268 | + | PS417_15930 | 0.43 | -0.4 | |
| 3,486,269 | - | PS417_15930 | 0.43 | +0.1 | |
| 3,486,340 | + | PS417_15930 | 0.51 | -0.5 | |
| 3,486,737 | + | -0.2 | |||
| 3,486,764 | + | +1.6 | |||
| 3,486,855 | - | -0.2 | |||
| 3,487,069 | + | PS417_15935 | 0.35 | -1.2 | |
| 3,487,070 | - | +1.6 | |||
| 3,487,073 | + | PS417_15935 | 0.36 | -1.6 | |
| 3,487,074 | - | -1.7 | |||
| 3,487,149 | + | PS417_15935 | 0.53 | +0.5 | |
| 3,487,360 | - | +0.3 | |||
| 3,487,360 | - | +0.0 | |||
| 3,487,534 | - | PS417_15940 | 0.12 | +0.1 | |
| 3,487,534 | - | PS417_15940 | 0.12 | -0.7 | |
| 3,487,690 | + | PS417_15940 | 0.23 | -0.1 | |
| 3,487,691 | - | PS417_15940 | 0.23 | +0.2 | |
| 3,487,691 | - | PS417_15940 | 0.23 | +1.0 | |
| 3,487,921 | - | PS417_15940 | 0.39 | +0.5 | |
| 3,487,961 | + | PS417_15940 | 0.42 | -0.5 |
Or see this region's nucleotide sequence