Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15700 and PS417_15705 are separated by 10 nucleotides PS417_15705 and PS417_15710 overlap by 8 nucleotides PS417_15710 and PS417_15715 are separated by 3 nucleotides
PS417_15700: PS417_15700 - peptidylprolyl isomerase, at 3,440,288 to 3,441,103
_15700
PS417_15705: PS417_15705 - nitrate reductase, at 3,441,114 to 3,441,794
_15705
PS417_15710: PS417_15710 - nitrate reductase, at 3,441,787 to 3,442,542
_15710
PS417_15715: PS417_15715 - nitrate reductase, at 3,442,546 to 3,444,084
_15715
Position (kb)
3441
3442
3443 Strain fitness (log2 ratio)
-1
0
1 at 3441.000 kb on + strand, within PS417_15700 at 3441.155 kb on - strand at 3441.400 kb on - strand, within PS417_15705 at 3441.400 kb on - strand, within PS417_15705 at 3441.566 kb on - strand, within PS417_15705 at 3441.754 kb on + strand at 3441.754 kb on + strand at 3441.755 kb on - strand at 3441.760 kb on + strand at 3441.761 kb on - strand at 3442.194 kb on - strand, within PS417_15710 at 3442.359 kb on - strand, within PS417_15710 at 3442.564 kb on + strand at 3442.611 kb on + strand at 3442.611 kb on + strand at 3442.611 kb on + strand at 3442.611 kb on + strand at 3442.612 kb on - strand at 3442.612 kb on - strand at 3442.734 kb on - strand, within PS417_15715 at 3442.734 kb on - strand, within PS417_15715 at 3442.757 kb on + strand at 3442.758 kb on - strand, within PS417_15715 at 3442.758 kb on - strand, within PS417_15715 at 3443.024 kb on + strand, within PS417_15715 at 3443.264 kb on + strand, within PS417_15715
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 3,441,000 + PS417_15700 0.87 +0.6 3,441,155 - -0.4 3,441,400 - PS417_15705 0.42 +0.0 3,441,400 - PS417_15705 0.42 +1.4 3,441,566 - PS417_15705 0.66 +0.1 3,441,754 + +0.1 3,441,754 + +1.3 3,441,755 - +0.1 3,441,760 + +1.6 3,441,761 - -0.4 3,442,194 - PS417_15710 0.54 -0.5 3,442,359 - PS417_15710 0.76 -1.7 3,442,564 + +0.1 3,442,611 + -0.6 3,442,611 + -0.2 3,442,611 + -0.3 3,442,611 + -0.6 3,442,612 - -0.1 3,442,612 - -0.7 3,442,734 - PS417_15715 0.12 +0.2 3,442,734 - PS417_15715 0.12 -1.5 3,442,757 + -1.2 3,442,758 - PS417_15715 0.14 -0.5 3,442,758 - PS417_15715 0.14 -0.0 3,443,024 + PS417_15715 0.31 +0.2 3,443,264 + PS417_15715 0.47 +0.1
Or see this region's nucleotide sequence