Strain Fitness in Pseudomonas simiae WCS417 around PS417_13205

Experiment: R2A with Fusaric 120 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13200 and PS417_13205 overlap by 4 nucleotidesPS417_13205 and PS417_13210 overlap by 4 nucleotidesPS417_13210 and PS417_13215 overlap by 4 nucleotides PS417_13200: PS417_13200 - isochorismate synthase, at 2,886,996 to 2,888,363 _13200 PS417_13205: PS417_13205 - isochorismate-pyruvate lyase, at 2,888,360 to 2,888,668 _13205 PS417_13210: PS417_13210 - enantio-pyochelin biosynthetic protein PchC, at 2,888,665 to 2,889,423 _13210 PS417_13215: PS417_13215 - Triostin synthetase I, at 2,889,420 to 2,891,018 _13215 Position (kb) 2888 2889Strain fitness (log2 ratio) -1 0 1at 2887.877 kb on - strand, within PS417_13200at 2888.412 kb on + strand, within PS417_13205at 2888.569 kb on - strand, within PS417_13205at 2888.569 kb on - strand, within PS417_13205at 2889.645 kb on + strand, within PS417_13215at 2889.645 kb on + strand, within PS417_13215at 2889.645 kb on + strand, within PS417_13215

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
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2,887,877 - PS417_13200 0.64 -0.4
2,888,412 + PS417_13205 0.17 +0.6
2,888,569 - PS417_13205 0.68 +0.7
2,888,569 - PS417_13205 0.68 +0.7
2,889,645 + PS417_13215 0.14 -0.3
2,889,645 + PS417_13215 0.14 +0.0
2,889,645 + PS417_13215 0.14 +0.6

Or see this region's nucleotide sequence