Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12810 and PS417_12815 are separated by 3 nucleotides PS417_12815 and PS417_12820 are separated by 149 nucleotides
PS417_12810: PS417_12810 - diguanylate cyclase, at 2,802,496 to 2,803,662
_12810
PS417_12815: PS417_12815 - diguanylate cyclase, at 2,803,666 to 2,805,843
_12815
PS417_12820: PS417_12820 - hypothetical protein, at 2,805,993 to 2,806,844
_12820
Position (kb)
2803
2804
2805
2806 Strain fitness (log2 ratio)
-1
0
1 at 2802.702 kb on + strand, within PS417_12810 at 2802.722 kb on + strand, within PS417_12810 at 2802.967 kb on + strand, within PS417_12810 at 2803.013 kb on + strand, within PS417_12810 at 2803.247 kb on - strand, within PS417_12810 at 2803.327 kb on + strand, within PS417_12810 at 2803.450 kb on - strand, within PS417_12810 at 2803.450 kb on - strand at 2803.450 kb on - strand, within PS417_12810 at 2803.615 kb on + strand at 2804.096 kb on + strand, within PS417_12815 at 2804.096 kb on + strand, within PS417_12815 at 2804.096 kb on + strand, within PS417_12815 at 2804.097 kb on - strand, within PS417_12815 at 2804.173 kb on + strand, within PS417_12815 at 2804.174 kb on - strand, within PS417_12815 at 2804.648 kb on + strand, within PS417_12815 at 2804.830 kb on + strand, within PS417_12815 at 2804.961 kb on - strand, within PS417_12815 at 2805.464 kb on + strand, within PS417_12815 at 2805.480 kb on - strand, within PS417_12815 at 2805.533 kb on + strand, within PS417_12815 at 2805.534 kb on - strand, within PS417_12815 at 2805.534 kb on - strand, within PS417_12815 at 2805.534 kb on - strand, within PS417_12815 at 2805.665 kb on + strand at 2805.665 kb on + strand at 2805.666 kb on - strand at 2805.666 kb on - strand at 2805.894 kb on - strand at 2805.894 kb on - strand at 2805.898 kb on - strand at 2805.898 kb on - strand at 2805.995 kb on - strand at 2806.055 kb on - strand at 2806.189 kb on + strand, within PS417_12820
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 2,802,702 + PS417_12810 0.18 -0.7 2,802,722 + PS417_12810 0.19 +0.1 2,802,967 + PS417_12810 0.40 +0.5 2,803,013 + PS417_12810 0.44 -1.3 2,803,247 - PS417_12810 0.64 +0.4 2,803,327 + PS417_12810 0.71 +0.1 2,803,450 - PS417_12810 0.82 -0.9 2,803,450 - +0.6 2,803,450 - PS417_12810 0.82 -0.2 2,803,615 + -0.4 2,804,096 + PS417_12815 0.20 -0.9 2,804,096 + PS417_12815 0.20 +0.2 2,804,096 + PS417_12815 0.20 -0.0 2,804,097 - PS417_12815 0.20 +1.4 2,804,173 + PS417_12815 0.23 -0.9 2,804,174 - PS417_12815 0.23 -1.1 2,804,648 + PS417_12815 0.45 -0.0 2,804,830 + PS417_12815 0.53 -1.1 2,804,961 - PS417_12815 0.59 +0.4 2,805,464 + PS417_12815 0.83 +0.1 2,805,480 - PS417_12815 0.83 +0.1 2,805,533 + PS417_12815 0.86 +0.7 2,805,534 - PS417_12815 0.86 -0.2 2,805,534 - PS417_12815 0.86 -0.2 2,805,534 - PS417_12815 0.86 -0.4 2,805,665 + -0.6 2,805,665 + -1.5 2,805,666 - +0.1 2,805,666 - -0.4 2,805,894 - +0.1 2,805,894 - -1.2 2,805,898 - -0.1 2,805,898 - -1.1 2,805,995 - -0.4 2,806,055 - -0.5 2,806,189 + PS417_12820 0.23 -0.6
Or see this region's nucleotide sequence