Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12805 and PS417_12810 are separated by 51 nucleotides PS417_12810 and PS417_12815 are separated by 3 nucleotides
PS417_12805: PS417_12805 - glycogen branching protein, at 2,800,207 to 2,802,444
_12805
PS417_12810: PS417_12810 - diguanylate cyclase, at 2,802,496 to 2,803,662
_12810
PS417_12815: PS417_12815 - diguanylate cyclase, at 2,803,666 to 2,805,843
_12815
Position (kb)
2802
2803
2804 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2801.698 kb on + strand, within PS417_12805 at 2801.699 kb on - strand, within PS417_12805 at 2801.737 kb on + strand, within PS417_12805 at 2801.737 kb on + strand, within PS417_12805 at 2801.737 kb on + strand, within PS417_12805 at 2801.738 kb on - strand, within PS417_12805 at 2801.738 kb on - strand, within PS417_12805 at 2801.738 kb on - strand, within PS417_12805 at 2801.738 kb on - strand, within PS417_12805 at 2801.800 kb on + strand, within PS417_12805 at 2801.800 kb on + strand, within PS417_12805 at 2801.800 kb on + strand, within PS417_12805 at 2801.801 kb on - strand, within PS417_12805 at 2801.801 kb on - strand, within PS417_12805 at 2801.920 kb on + strand, within PS417_12805 at 2802.034 kb on + strand, within PS417_12805 at 2802.034 kb on + strand, within PS417_12805 at 2802.034 kb on + strand at 2802.250 kb on + strand at 2802.250 kb on + strand at 2802.314 kb on - strand at 2802.314 kb on - strand at 2802.348 kb on - strand at 2802.478 kb on + strand at 2802.479 kb on - strand at 2802.576 kb on - strand at 2802.646 kb on + strand, within PS417_12810 at 2802.646 kb on + strand at 2802.702 kb on + strand, within PS417_12810 at 2802.722 kb on + strand, within PS417_12810 at 2802.967 kb on + strand, within PS417_12810 at 2803.013 kb on + strand, within PS417_12810 at 2803.247 kb on - strand, within PS417_12810 at 2803.327 kb on + strand, within PS417_12810 at 2803.450 kb on - strand, within PS417_12810 at 2803.450 kb on - strand at 2803.450 kb on - strand, within PS417_12810 at 2803.615 kb on + strand at 2804.096 kb on + strand, within PS417_12815 at 2804.096 kb on + strand, within PS417_12815 at 2804.096 kb on + strand, within PS417_12815 at 2804.097 kb on - strand, within PS417_12815 at 2804.173 kb on + strand, within PS417_12815 at 2804.174 kb on - strand, within PS417_12815 at 2804.648 kb on + strand, within PS417_12815
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 2,801,698 + PS417_12805 0.67 +2.3 2,801,699 - PS417_12805 0.67 +2.2 2,801,737 + PS417_12805 0.68 +3.1 2,801,737 + PS417_12805 0.68 +2.5 2,801,737 + PS417_12805 0.68 +2.4 2,801,738 - PS417_12805 0.68 +2.3 2,801,738 - PS417_12805 0.68 +2.4 2,801,738 - PS417_12805 0.68 +1.9 2,801,738 - PS417_12805 0.68 +2.2 2,801,800 + PS417_12805 0.71 +2.6 2,801,800 + PS417_12805 0.71 +2.4 2,801,800 + PS417_12805 0.71 +2.1 2,801,801 - PS417_12805 0.71 +3.0 2,801,801 - PS417_12805 0.71 +1.8 2,801,920 + PS417_12805 0.77 +2.2 2,802,034 + PS417_12805 0.82 +2.0 2,802,034 + PS417_12805 0.82 +2.7 2,802,034 + +2.0 2,802,250 + +2.0 2,802,250 + +2.0 2,802,314 - +2.5 2,802,314 - +2.4 2,802,348 - +3.4 2,802,478 + -0.2 2,802,479 - +0.3 2,802,576 - +0.0 2,802,646 + PS417_12810 0.13 -0.7 2,802,646 + +0.4 2,802,702 + PS417_12810 0.18 -0.7 2,802,722 + PS417_12810 0.19 +0.1 2,802,967 + PS417_12810 0.40 +0.5 2,803,013 + PS417_12810 0.44 -1.3 2,803,247 - PS417_12810 0.64 +0.4 2,803,327 + PS417_12810 0.71 +0.1 2,803,450 - PS417_12810 0.82 -0.9 2,803,450 - +0.6 2,803,450 - PS417_12810 0.82 -0.2 2,803,615 + -0.4 2,804,096 + PS417_12815 0.20 -0.9 2,804,096 + PS417_12815 0.20 +0.2 2,804,096 + PS417_12815 0.20 -0.0 2,804,097 - PS417_12815 0.20 +1.4 2,804,173 + PS417_12815 0.23 -0.9 2,804,174 - PS417_12815 0.23 -1.1 2,804,648 + PS417_12815 0.45 -0.0
Or see this region's nucleotide sequence