Strain Fitness in Pseudomonas simiae WCS417 around PS417_09335
Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | R2A with Fusaric 120 ug/mL |
|---|---|---|---|---|---|
| remove | |||||
| 2,025,351 | + | PS417_09330 | 0.37 | -1.3 | |
| 2,025,624 | + | PS417_09330 | 0.65 | +0.2 | |
| 2,025,624 | + | PS417_09330 | 0.65 | -0.2 | |
| 2,025,742 | + | PS417_09330 | 0.77 | -1.9 | |
| 2,025,742 | + | PS417_09330 | 0.77 | -0.2 | |
| 2,026,012 | + | -1.2 | |||
| 2,026,334 | - | PS417_09335 | 0.35 | +0.6 | |
| 2,026,794 | + | -0.1 | |||
| 2,027,068 | + | PS417_09340 | 0.28 | +0.4 | |
| 2,027,068 | + | PS417_09340 | 0.28 | -0.3 | |
| 2,027,069 | - | PS417_09340 | 0.28 | -0.3 | |
| 2,027,094 | + | PS417_09340 | 0.31 | -0.3 | |
| 2,027,094 | + | PS417_09340 | 0.31 | -0.5 | |
| 2,027,095 | - | PS417_09340 | 0.31 | -0.2 | |
| 2,027,113 | + | PS417_09340 | 0.33 | +2.2 |
Or see this region's nucleotide sequence